[BioC] Building BioC packages from source on MacOSX (R-2.3.0)

[Benilton Carvalho]

That was the case. If the preference is to make a system-wide instal., 
then it also suffices to use ./configure --disable-R-framework :)

Thanks Kasper.

b.

On Mon, 10 Apr 2006, Kasper Daniel Hansen wrote:

> I think Benilton did a
>   make install
> after he compiled R. Benilton: I believe most of us just compiles R,
> stopping after the make step and then just do R-devel/bin/R CMD ....,
> ie. running R directly from the build directory instead of installing
> it on the system. Given that you have already build R, it should be a
> 2 sec. test :) Of course, that may not help at all....
>
> /Kasper
>
> On Apr 10, 2006, at 9:25 AM, Seth Falcon wrote:
>
>> Benilton Carvalho <bcarvalh at jhsph.edu> writes:
>>
>>> i do have a .Rprofile, which sets the pager and the editor. Even upon
>>> its removal i get the same error.
>>>
>>> is there a way i can make sure R is (not) picking up an old config
>>> file? i was positive i deleted everything before (re)trying, but i
>>> might have missed something.
>>
>> The error message you reported has this in it:
>>
>>     ** arch - Frameworks
>>     /Library/Frameworks/R.framework/Resources/share/make/shlib.mk:3:
>>     /Library/Frameworks/R.framework/Resources/etc/Frameworks/
>> Makeconf: No such file
>>     or directory
>>     make: *** No rule to make target
>>
>> So I would try nuking /Library/Frameworks/R.framework
>> But I'm still quite puzzled.  For example, I have such a directory
>> from a binary install of R, but it does not interfere with my from
>> source R build.
>>
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