[BioC] is Biostrings being maintained?

[Antoine Lucas]

Dear all

I am working on GeneR wich maybe partly overlap Biostring possibilities 
since its includes a lot of tools for sequence manipulation.

This package allows to look for oligomer in huge sequences (i.e: a whole
chromosome) and we are currently working on the windows version.

Regards,

	Antoine Lucas

	

Le Thu, 27 Oct 2005 17:03:54 -0700
Robert Gentleman <rgentlem at fhcrc.org> a écrit:

> Hi Marcus,
>    Yes, sort of, if you want to send me code, or discuss off line,
>   we are hoping to spend some time on new capabilities here over the 
> next few months. And I will (thought I already had) change the 
> maintainer info.
> 
>    Robert
> 
> Marcus G. Daniels wrote:
> > Hello,
> > 
> > Does anyone know if Biostrings is being maintained?  I see the version 
> > number bumped between Bioconductor releases, but the maintainer's 
> > (Saikat Debroy) e-mail bounces at the University of Wisconsin.
> > 
> > One thing I'd like to add support for matching amino acid strings.  It 
> > seems to be partially implemented, so I wonder if anyone else has a 
> > later version than is to be included in 1.8.
> > 
> > Alternatively, if anyone knows of an R package that already has the 
> > capability to do high-speed matching of multiple strings (with an amino 
> > acid alphabet), I'd appreciate the pointer.
> > 
> > Thanks!
> > 
> > _______________________________________________
> > Bioconductor mailing list
> > Bioconductor at stat.math.ethz.ch
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > 
> 
> -- 
> Robert Gentleman, PhD
> Program in Computational Biology
> Division of Public Health Sciences
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N, M2-B876
> PO Box 19024
> Seattle, Washington 98109-1024
> 206-667-7700
> rgentlem at fhcrc.org
> 
> _______________________________________________
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> 


-- 
Antoine Lucas
Centre de génétique Moléculaire, CNRS
91198 Gif sur Yvette Cedex
Tel: (33)1 69 82 38 89
Fax: (33)1 69 82 38 77