[BioC] limma and 'randomizedBlockFit' is deprecate

Gordon K Smyth smyth at wehi.EDU.AU
Thu Oct 27 00:51:44 CEST 2005

There's been a name change for the function in the statmod package.  You get this
warning because you have re-installed the statmod package since Oct 20 but don't
yet have the corresponding limma version update.  Try limma again today (from


> Date: Tue, 25 Oct 2005 23:08:05 -0400
> From: Naomi Altman <naomi at stat.psu.edu>
> Subject: [BioC] limma and 'randomizedBlockFit' is deprecate
> To: bioconductor at stat.math.ethz.ch
> I just installed the latest version of R (2.2.0) and reinstalled and
> updated limma.  When I ran duplicateCorrelation I got the following
> warning (presumably 22500 times).
> 'randomizedBlockFit' is deprecated.
> Use 'mixedModel2Fit' instead.
> Naomi S. Altman                                814-865-3791 (voice)
> Associate Professor
> Dept. of Statistics                              814-863-7114 (fax)
> Penn State University                         814-865-1348 (Statistics)
> University Park, PA 16802-2111

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