[BioC] Redirected to BioC Re: [Bioc-devel] aafTableAnn() in annaffy_1.0.18 ?

[James W. MacDonald]

xinan yang wrote:
> I downloaded the package annaffy_1.0.18.tar.gz, installed it.
> 
> Following the vgnette, I met error ad below:
> 
> data(aafExpr)
> probeids=geneNames(aafExpr)
> anncols=aaf.handler()[c(1:3,8:9,11:13)]
> temp=aafTableAnn(probeids[1:5],"hgu95av2",anncols)
> Error in mget(c("1027_at", "1065_at", "1088_at", "1096_g_at", "1099_s_at" :
>         recursive default argument reference

This isn't a devel question, so the correct list would be the regular 
bioconductor help list <bioconductor at stat.math.ethz.ch>. In addition, 
you need to give the output of sessionInfo() if you expect anybody to be 
able to give reasonable help.

As a guess, I would imagine that perhaps Biobase or one of the 
annotation packages is out of date. Any time I have ever seen this 
error, a quick update usually solves the problem.

source("http://www.bioconductor.org/biocLite.R")
biocLite()
biocLite(c("GO","hgu95av2","KEGG"))

Best,

Jim


> 
> 
> Who can help me to solve it?
> I use R 2.1.1 in Redhat 9.
> 
> Thanks,
> 
> xinan
> 
> _______________________________________________
> Bioc-devel at stat.math.ethz.ch mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel


-- 
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
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Ann Arbor MI 48109
734-647-5623