[BioC] goHyperG generates GO links at arrays.ucsf.edu with wrong perl script,
Robert Gentleman
rgentlem at fhcrc.org
Wed Oct 12 20:53:52 CEST 2005
Hi,
I don't see where GOstats is creating any html, which is what you
claimed originally. Please do try to be careful to point blame at the
right piece of software.
Second, we do not control or really know anything about the UCSF service
you are linking to, and I certainly don't know what version of GO they
are using (or even why there would be any links to GO terms, none of the
boxes there suggest that there are any mappings to GO). Do they provide
you with documentation telling you how this should work? (I don't want
an answer, I think you need to bring this up with them).
Your problem seems to be with UCSF and not us (you might ask what
version of GO they are using). GOstats uses the GO mappings provided in
the annotation packages you are using and these are well documented,
please read the appropriate manual pages. As near as I can tell our
packages seem to be up to date.
If you had checked some other data source, such as Amigo, you would find
that they report (as do we) that
GO:0030111, is in the biological process ontology and is involved in
Wnt signaling. Again suggesting that the deficiency lies elsewhere.
Robert
Saurin Jani wrote:
> Dear BioC,
>
> Here are the versions I have for packages and R. I use
> affy data. e.g. here, moe430a GeneChip. I have also
> attached HTML file(which links to
> http://arrays.ucsf.edu/cgi-bin/oligo_db.pl) along with
> this email, Please take a look of that.
>
>
>>package.version("affy")
>
> [1] "1.6.7"
>
>>package.version("GO")
>
> [1] "1.8.2"
>
>>package.version("GOstats")
>
> [1] "1.1.3"
>
>>package.version("moe430a")
>
> [1] "1.8.5"
>
>>getRversion()
>
> [1] ‘2.2.0’
>
>
>>myGOreports_1(myDEGenes,chiptype,"GeneOntology_Cellular_Component_Report.html","GeneOntology_Molecular_Function_Report.html","GeneOntology_BiologicalProcess_Report.html");
>
> #---------------------------------------
> # Gene Ontology function
> #---------------------------------------
>
> myGOreports_1 <-
> function(Gnames,chiptype,CCfile,MFfile,BPfile)
> {
>
> myLL <- getLL(Gnames,chiptype);
> myUNQLL <-
> as.character(na.omit(unique(unlist(myLL))));
>
> # for CC Go report
> #-----------------
> myGOCC <- GOHyperG(myUNQLL, lib = chiptype,
> what="CC");
> DECCnodes = names(myGOCC$intCounts);
> CCTERMS <- as.matrix(unlist(getGOTerm(DECCnodes)));
> CC_Genes <- as.matrix(as.vector(myGOCC$intCounts));
> CC_pvalues <- as.vector(myGOCC$pvalues);
> CC_AllGenes <-
> as.matrix(as.vector(myGOCC$goCounts));
>
> GOtable_CC <-
> as.table(cbind(DECCnodes,CCTERMS,CC_Genes,CC_pvalues,CC_AllGenes));
> colnames(GOtable_CC) <- c("GO ID","GO TERM :
> Cellular Component ",
> "No of DE Genes ","p-values"," Total No of
> Genes from Array Chip ");
> table2html(GOtable_CC,filename = CCfile,
> title = " Gene Ontology: Cellular Component
> Report",disp = c("File"));
>
> # for MF Go report
> #-----------------
> myGOMF <- GOHyperG(myUNQLL, lib= chiptype,
> what="MF");
> DEMFnodes = names(myGOMF$intCounts);
> MFTERMS <- as.matrix(unlist(getGOTerm(DEMFnodes)));
> MF_Genes <- as.vector(myGOMF$intCounts);
> MF_pvalues <- as.vector(myGOMF$pvalues);
> MF_AllGenes <-
> as.matrix(as.vector(myGOMF$goCounts));
>
> GOtable_MF <-
> as.table(cbind(DEMFnodes,MFTERMS,MF_Genes,MF_pvalues,MF_AllGenes));
> colnames(GOtable_MF) <- c("GO ID","GO Term :
> Molecular Function ",
> "No of DE Genes ","p-values"," Total No of
> Genes from Array Chip ");
>
> table2html(GOtable_MF,filename = MFfile,title =
> " Gene Ontology: Molecular Function Report",disp
> = c("File"));
>
> # for BP Go report
> #-----------------
> myGOBP <- GOHyperG(myUNQLL, lib=chiptype,
> what="BP");
> DEBPnodes = as.vector(names(myGOBP$intCounts));
> BPTERMS <- as.vector(unlist(getGOTerm(DEBPnodes)));
> BP_Genes = as.vector(myGOBP$intCounts);
> BP_pvalues <- as.vector(myGOBP$pvalues);
> BP_AllGenes <-
> as.matrix(as.vector(myGOBP$goCounts));
>
> GOtable_BP <-
> as.table(cbind(DEBPnodes,BPTERMS,BP_Genes,BP_pvalues,BP_AllGenes));
> colnames(GOtable_BP) <- c("GO ID","GO Term :
> Biological Process ",
> "No of DE Genes ","p-values"," Total No of Genes
> from Array Chip ");
> table2html(GOtable_BP,filename = BPfile,
> title = " Gene Ontology: Biological Process
> Report",disp = c("File"));
>
> }#myGOreport_1
>
> #---------------------------------------
> # End of Gene Ontology function
> #---------------------------------------
>
>
> Please let me know, if I can add links while
> generating GO html file.
>
> Thank you so much,
> Saurin
>
>
> --- Robert Gentleman <rgentlem at fhcrc.org> wrote:
>
>
>>Can you please give enough of an example that we can
>>test this. The
>>output of sessionInfo or enough package version
>>information that there
>>is some chance that someone could help you?
>>
>>
>>Saurin Jani wrote:
>>
>>>Dear BioC,
>>>
>>>We have noticed that the GOHyperG function within
>>
>>the
>>
>>>GOstat package generates HTML links to GOIDs that
>>
>>have
>>
>>>NO associated information. A typical link is
>>>
>>
> http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030111.
>
>>>Is there a fix for this problem?
>>>
>>>Thank you,
>>>Saurin
>>>
>>>_______________________________________________
>>>Bioconductor mailing list
>>>Bioconductor at stat.math.ethz.ch
>>>https://stat.ethz.ch/mailman/listinfo/bioconductor
>>>
>>
>>--
>>Robert Gentleman, PhD
>>Program in Computational Biology
>>Division of Public Health Sciences
>>Fred Hutchinson Cancer Research Center
>>1100 Fairview Ave. N, M2-B876
>>PO Box 19024
>>Seattle, Washington 98109-1024
>>206-667-7700
>>rgentlem at fhcrc.org
>>
>
>
>
>
> __________________________________
>
>
>
> ------------------------------------------------------------------------
>
>
> BioConductor Gene Listing
>
> Gene Ontology: Biological Process Report
>
> GO ID GO Term : Biological Process No of DE Genes p-values Total No of
> Genes from Array Chip
> [1]GO:0044260 cellular macromolecule metabolism 43
> 0.000122268149757588 2061
> [2]GO:0043170 macromolecule metabolism 44 0.000183024469684881 2165
> [3]GO:0044267 cellular protein metabolism 40 0.000237823704615954 1914
> [4]GO:0019538 protein metabolism 40 0.000279434427326792 1928
> [5]GO:0007264 small GTPase mediated signal transduction 9
> 0.000361225751379745 179
> [6]GO:0006512 ubiquitin cycle 12 0.000469703089092613 313
> [7]GO:0015031 protein transport 14 0.000627045391176469 419
> [8]GO:0045184 establishment of protein localization 14
> 0.000688738831539796 423
> [9]GO:0006464 protein modification 24 0.000885770248469767 992
> [10]GO:0008104 protein localization 14 0.00105715454332105 442
> [11]GO:0006470 protein amino acid dephosphorylation 5
> 0.00460578103291763 88
> [12]GO:0016311 dephosphorylation 5 0.00506754348221195 90
> [13]GO:0016358 dendrite morphogenesis 2 0.00516841581390101 9
> [14]GO:0030032 lamellipodium biogenesis 2 0.00776961115268652 11
> [15]GO:0050875 cellular physiological process 91 0.0081220349351076
> 6465
> [16]GO:0006376 mRNA splice site selection 2 0.00924860898239886 12
> [17]GO:0006914 autophagy 2 0.00924860898239886 12
> [18]GO:0006810 transport 30 0.0109278227910251 1609
> [19]GO:0051234 establishment of localization 30 0.0112135508302684
> 1612
> [20]GO:0007113 endomitotic cell cycle 1 0.0123839009287926 1
> [21]GO:0007242 intracellular signaling cascade 14 0.0128519895885059
> 585
> [22]GO:0051179 localization 30 0.0129521347392411 1629
> [23]GO:0007399 neurogenesis 8 0.0136300851168722 255
> [24]GO:0006793 phosphorus metabolism 13 0.0172618641397403 547
> [25]GO:0006796 phosphate metabolism 13 0.0172618641397403 547
> [26]GO:0009987 cellular process 101 0.0177374991982302 7556
> [27]GO:0019226 transmission of nerve impulse 5 0.0192782513240490 125
> [28]GO:0006886 intracellular protein transport 8 0.0201556290239905
> 274
> [29]GO:0007160 cell-matrix adhesion 3 0.0213441887979593 48
> [30]GO:0000245 spliceosome assembly 2 0.0226513976650996 19
> [31]GO:0043065 positive regulation of apoptosis 4 0.0234455448799853
> 88
> [32]GO:0043068 positive regulation of programmed cell death 4
> 0.0243214415874302 89
> [33]GO:0009950 dorsal/ventral axis specification 1 0.0246158434402249
> 2
> [34]GO:0030838 positive regulation of actin filament polymerization 1
> 0.0246158434402249 2
> [35]GO:0001578 microtubule bundle formation 1 0.0246158434402249 2
> [36]GO:0019307 mannose biosynthesis 1 0.0246158434402249 2
> [37]GO:0035117 embryonic arm morphogenesis 1 0.0246158434402249 2
> [38]GO:0035140 arm morphogenesis 1 0.0246158434402249 2
> [39]GO:0007635 chemosensory behavior 1 0.0246158434402249 2
> [40]GO:0006884 regulation of cell volume 1 0.0246158434402249 2
> [41]GO:0006670 sphingosine metabolism 1 0.0246158434402249 2
> [42]GO:0007267 cell-cell signaling 6 0.0270928872101407 185
> [43]GO:0042981 regulation of apoptosis 6 0.0283631992535286 187
> [44]GO:0048469 cell maturation 2 0.0298738173478577 22
> [45]GO:0043067 regulation of programmed cell death 6
> 0.0303417111388774 190
> [46]GO:0030031 cell projection biogenesis 2 0.0324588240132366 23
> [47]GO:0030030 cell projection organization and biogenesis 2
> 0.0351283963140034 24
> [48]GO:0009954 proximal/distal pattern formation 1 0.0366976749471014
> 3
> [49]GO:0035115 embryonic forelimb morphogenesis 1 0.0366976749471014 3
> [50]GO:0035116 embryonic hindlimb morphogenesis 1 0.0366976749471014 3
> [51]GO:0006013 mannose metabolism 1 0.0366976749471014 3
> [52]GO:0006651 diacylglycerol biosynthesis 1 0.0366976749471014 3
> [53]GO:0016071 mRNA metabolism 5 0.0411099452662915 153
> [54]GO:0045667 regulation of osteoblast differentiation 1
> 0.0486312206119001 4
> [55]GO:0035136 forelimb morphogenesis 1 0.0486312206119001 4
> [56]GO:0035137 hindlimb morphogenesis 1 0.0486312206119001 4
> [57]GO:0046339 diacylglycerol metabolism 1 0.0486312206119001 4
> [58]GO:0007628 adult walking behavior 1 0.0486312206119001 4
> [59]GO:0042733 embryonic digit morphogenesis 1 0.0486312206119001 4
> [60]GO:0017156 calcium ion-dependent exocytosis 1 0.0486312206119001 4
> [61]GO:0006972 hyperosmotic response 1 0.0486312206119001 4
> [62]GO:0007610 behavior 6 0.0494600552456512 214
> [63]GO:0043062 extracellular structure organization and biogenesis 2
> 0.0496606467214814 29
> [64]GO:0030198 extracellular matrix organization and biogenesis 2
> 0.0496606467214814 29
> [65]GO:0016567 protein ubiquitination 4 0.0499986533545084 112
> [66]GO:0007268 synaptic transmission 4 0.0541376869816165 115
> [67]GO:0006461 protein complex assembly 3 0.0596059937460065 72
> [68]GO:0030833 regulation of actin filament polymerization 1
> 0.060418283612234 5
> [69]GO:0001569 patterning of blood vessels 1 0.060418283612234 5
> [70]GO:0046460 neutral lipid biosynthesis 1 0.060418283612234 5
> [71]GO:0046463 acylglycerol biosynthesis 1 0.060418283612234 5
> [72]GO:0030073 insulin secretion 1 0.060418283612234 5
> [73]GO:0012502 induction of programmed cell death 3 0.065745599153856
> 75
> [74]GO:0006917 induction of apoptosis 3 0.065745599153856 75
> [75]GO:0001837 epithelial to mesenchymal transition 1
> 0.0720606454031795 6
> [76]GO:0043161 proteasomal ubiquitin-dependent protein catabolism 1
> 0.0720606454031795 6
> [77]GO:0045017 glycerolipid biosynthesis 1 0.0720606454031795 6
> [78]GO:0006144 purine base metabolism 1 0.0720606454031795 6
> [79]GO:0030072 peptide hormone secretion 1 0.0720606454031795 6
> [80]GO:0015988 energy coupled proton transport, against
> electrochemical gradient 1 0.0720606454031795 6
> [81]GO:0046504 glycerol ether biosynthesis 1 0.0720606454031795 6
> [82]GO:0006970 response to osmotic stress 1 0.0720606454031795 6
> [83]GO:0030036 actin cytoskeleton organization and biogenesis 3
> 0.0765940351052173 80
> [84]GO:0016055 Wnt receptor signaling pathway 3 0.0834583141194431 83
> [85]GO:0050808 synapse organization and biogenesis 1
> 0.0835600659764962 7
> [86]GO:0030029 actin filament-based process 3 0.0858035696256962 84
> [87]GO:0006605 protein targeting 4 0.0899115098330559 137
> [88]GO:0006397 mRNA processing 4 0.0917559888607071 138
> [89]GO:0001649 osteoblast differentiation 1 0.0949182841167923 8
> [90]GO:0007272 ionic insulation of neurons by glial cells 1
> 0.0949182841167923 8
> [91]GO:0009156 ribonucleoside monophosphate biosynthesis 1
> 0.0949182841167923 8
> [92]GO:0006638 neutral lipid metabolism 1 0.0949182841167923 8
> [93]GO:0006639 acylglycerol metabolism 1 0.0949182841167923 8
> [94]GO:0042552 myelination 1 0.0949182841167923 8
> [95]GO:0042553 cellular nerve ensheathment 1 0.0949182841167923 8
> [96]GO:0016070 RNA metabolism 6 0.097690958069258 256
> [97]GO:0051049 regulation of transport 2 0.0989251495242563 43
> [98]GO:0006915 apoptosis 7 0.101615310892689 320
> [99]GO:0015992 proton transport 2 0.102829511224669 44
> [100]GO:0046486 glycerolipid metabolism 1 0.106137017654654 9
> [101]GO:0009161 ribonucleoside monophosphate metabolism 1
> 0.106137017654654 9
> [102]GO:0009124 nucleoside monophosphate biosynthesis 1
> 0.106137017654654 9
> [103]GO:0009798 axis specification 1 0.106137017654654 9
> [104]GO:0006662 glycerol ether metabolism 1 0.106137017654654 9
> [105]GO:0012501 programmed cell death 7 0.106687053524506 324
> [106]GO:0046907 intracellular transport 8 0.107651920129595 388
> [107]GO:0006821 chloride transport 2 0.110762600504994 46
> [108]GO:0006396 RNA processing 5 0.113794645580026 207
> [109]GO:0008344 adult locomotory behavior 1 0.117217963716786 10
> [110]GO:0001508 regulation of action potential 1 0.117217963716786 10
> [111]GO:0008637 apoptotic mitochondrial changes 1 0.117217963716786 10
> [112]GO:0009123 nucleoside monophosphate metabolism 1
> 0.117217963716786 10
> [113]GO:0030041 actin filament polymerization 1 0.117217963716786 10
> [114]GO:0046879 hormone secretion 1 0.117217963716786 10
> [115]GO:0006595 polyamine metabolism 1 0.117217963716786 10
> [116]GO:0017157 regulation of exocytosis 1 0.117217963716786 10
> [117]GO:0007155 cell adhesion 8 0.121013669695966 399
> [118]GO:0048468 cell development 2 0.122949423557314 49
> [119]GO:0009260 ribonucleotide biosynthesis 2 0.122949423557314 49
> [120]GO:0016192 vesicle-mediated transport 5 0.124277298132887 213
> [121]GO:0008366 nerve ensheathment 1 0.128162798973196 11
> [122]GO:0001702 gastrulation (sensu Deuterostomia) 1 0.128162798973196
> 11
> [123]GO:0030832 regulation of actin filament length 1
> 0.128162798973196 11
> [124]GO:0048489 synaptic vesicle transport 1 0.128162798973196 11
> [125]GO:0048276 gastrulation (sensu Vertebrata) 1 0.128162798973196 11
> [126]GO:0009112 nucleobase metabolism 1 0.128162798973196 11
> [127]GO:0010003 gastrulation (sensu Mammalia) 1 0.128162798973196 11
> [128]GO:0008064 regulation of actin polymerization and/or
> depolymerization 1 0.128162798973196 11
> [129]GO:0006672 ceramide metabolism 1 0.138973179881450 12
> [130]GO:0042551 nerve maturation 1 0.138973179881450 12
> [131]GO:0006818 hydrogen transport 2 0.139671512432270 53
> [132]GO:0006457 protein folding 4 0.145673421836440 164
> [133]GO:0008219 cell death 7 0.147407024588177 353
> [134]GO:0043086 negative regulation of enzyme activity 1
> 0.149650742928046 13
> [135]GO:0051348 negative regulation of transferase activity 1
> 0.149650742928046 13
> [136]GO:0008624 induction of apoptosis by extracellular signals 1
> 0.149650742928046 13
> [137]GO:0007281 germ cell development 1 0.149650742928046 13
> [138]GO:0006469 negative regulation of protein kinase activity 1
> 0.149650742928046 13
> [139]GO:0046519 sphingoid metabolism 1 0.149650742928046 13
> [140]GO:0009259 ribonucleotide metabolism 2 0.152518435859711 56
> [141]GO:0016265 death 7 0.156657013335446 359
> [142]GO:0030534 adult behavior 1 0.160197104866927 14
> [143]GO:0000160 two-component signal transduction system
> (phosphorelay) 1 0.160197104866927 14
> [144]GO:0007154 cell communication 29 0.160879257852777 1957
> [145]GO:0007582 physiological process 94 0.170173042774692 7252
> [146]GO:0009953 dorsal/ventral pattern formation 1 0.170613862955174
> 15
> [147]GO:0043087 regulation of GTPase activity 1 0.170613862955174 15
> [148]GO:0007269 neurotransmitter secretion 1 0.170613862955174 15
> [149]GO:0007626 locomotory behavior 4 0.178857560804193 178
> [150]GO:0006897 endocytosis 3 0.179725293785458 118
> [151]GO:0000723 telomere maintenance 1 0.180902595185916 16
> [152]GO:0045055 regulated secretory pathway 1 0.180902595185916 16
> [153]GO:0001763 branching morphogenesis 1 0.180902595185916 16
> [154]GO:0043066 negative regulation of apoptosis 2 0.183301753218468
> 63
> [155]GO:0043069 negative regulation of programmed cell death 2
> 0.187774170363273 64
> [156]GO:0007507 heart development 2 0.187774170363273 64
> [157]GO:0006814 sodium ion transport 2 0.187774170363273 64
> [158]GO:0009408 response to heat 1 0.191064860518475 17
> [159]GO:0007417 central nervous system development 2 0.192261946832511
> 65
> [160]GO:0015672 monovalent inorganic cation transport 4
> 0.193808859953191 184
> [161]GO:0019319 hexose biosynthesis 1 0.201102199105792 18
> [162]GO:0008154 actin polymerization and/or depolymerization 1
> 0.201102199105792 18
> [163]GO:0046364 monosaccharide biosynthesis 1 0.201102199105792 18
> [164]GO:0046165 alcohol biosynthesis 1 0.201102199105792 18
> [165]GO:0007611 learning and/or memory 1 0.201102199105792 18
> [166]GO:0009116 nucleoside metabolism 1 0.201102199105792 18
> [167]GO:0016310 phosphorylation 8 0.203141031921298 456
> [168]GO:0000074 regulation of cell cycle 5 0.208728554085084 255
> [169]GO:0001525 angiogenesis 2 0.210345930355927 69
> [170]GO:0006414 translational elongation 1 0.211016132519163 19
> [171]GO:0006874 calcium ion homeostasis 1 0.211016132519163 19
> [172]GO:0009880 embryonic pattern specification 1 0.211016132519163 19
> [173]GO:0019725 cell homeostasis 2 0.219453783607106 71
> [174]GO:0006725 aromatic compound metabolism 2 0.219453783607106 71
> [175]GO:0051128 regulation of cell organization and biogenesis 1
> 0.220808163970316 20
> [176]GO:0009266 response to temperature 1 0.220808163970316 20
> [177]GO:0030855 epithelial cell differentiation 1 0.23047977853085 21
> [178]GO:0043119 positive regulation of physiological process 5
> 0.235759025403598 267
> [179]GO:0030900 forebrain development 1 0.240032443349088 22
> [180]GO:0006665 sphingolipid metabolism 1 0.240032443349088 22
> [181]GO:0030100 regulation of endocytosis 1 0.240032443349088 22
> [182]GO:0044238 primary metabolism 57 0.242284264259565 4271
> [183]GO:0006092 main pathways of carbohydrate metabolism 2
> 0.242356140333526 76
> [184]GO:0007050 cell cycle arrest 1 0.249467607864354 23
> [185]GO:0007398 ectoderm development 1 0.249467607864354 23
> [186]GO:0007369 gastrulation 1 0.249467607864354 23
> [187]GO:0006099 tricarboxylic acid cycle 1 0.249467607864354 23
> [188]GO:0009060 aerobic respiration 1 0.249467607864354 23
> [189]GO:0051258 protein polymerization 1 0.249467607864354 23
> [190]GO:0006468 protein amino acid phosphorylation 7 0.250586002432075
> 413
> [191]GO:0048514 blood vessel morphogenesis 2 0.251552150362895 78
> [192]GO:0031175 neurite morphogenesis 2 0.256154433357011 79
> [193]GO:0046356 acetyl-CoA catabolism 1 0.258786704018717 24
> [194]GO:0045045 secretory pathway 2 0.26536374478563 81
> [195]GO:0043283 biopolymer metabolism 16 0.266235136438376 1086
> [196]GO:0000082 G1/S transition of mitotic cell cycle 1
> 0.267991146466225 25
> [197]GO:0015985 energy coupled proton transport, down electrochemical
> gradient 1 0.267991146466225 25
> [198]GO:0015986 ATP synthesis coupled proton transport 1
> 0.267991146466225 25
> [199]GO:0050790 regulation of enzyme activity 2 0.274574512827122 83
> [200]GO:0035113 embryonic appendage morphogenesis 1 0.277082332779662
> 26
> [201]GO:0009109 coenzyme catabolism 1 0.277082332779662 26
> [202]GO:0045333 cellular respiration 1 0.277082332779662 26
> [203]GO:0030324 lung development 1 0.277082332779662 26
> [204]GO:0030326 embryonic limb morphogenesis 1 0.277082332779662 26
> [205]GO:0019318 hexose metabolism 2 0.279178682173498 84
> [206]GO:0005996 monosaccharide metabolism 2 0.283781136688035 85
> [207]GO:0035107 appendage morphogenesis 1 0.286061643654854 27
> [208]GO:0035108 limb morphogenesis 1 0.286061643654854 27
> [209]GO:0030323 respiratory tube development 1 0.286061643654854 27
> [210]GO:0009057 macromolecule catabolism 8 0.291288248934573 507
> [211]GO:0000398 nuclear mRNA splicing, via spliceosome 2
> 0.297571712116435 88
> [212]GO:0000375 RNA splicing, via transesterification reactions 2
> 0.297571712116435 88
> [213]GO:0000377 RNA splicing, via transesterification reactions with
> bulged adenosine as nucleophile 2 0.297571712116435 88
> [214]GO:0009165 nucleotide biosynthesis 2 0.297571712116435 88
> [215]GO:0007001 chromosome organization and biogenesis (sensu
> Eukaryota) 3 0.297778716586416 154
> [216]GO:0006928 cell motility 3 0.301173460180510 155
> [217]GO:0001568 blood vessel development 2 0.302160888295709 89
> [218]GO:0051187 cofactor catabolism 1 0.303690078697953 29
> [219]GO:0006066 alcohol metabolism 3 0.304570423597356 156
> [220]GO:0001944 vasculature development 2 0.306745219238317 90
> [221]GO:0040011 locomotion 3 0.311369859933024 158
> [222]GO:0006364 rRNA processing 1 0.312341881677776 30
> [223]GO:0019933 cAMP-mediated signaling 1 0.312341881677776 30
> [224]GO:0006836 neurotransmitter transport 1 0.312341881677776 30
> [225]GO:0007165 signal transduction 21 0.313806599758675 1509
> [226]GO:0009887 organogenesis 12 0.318219425964518 822
> [227]GO:0006096 glycolysis 1 0.320887167235111 31
> [228]GO:0035239 tube morphogenesis 1 0.320887167235111 31
> [229]GO:0000226 microtubule cytoskeleton organization and biogenesis 1
> 0.320887167235111 31
> [230]GO:0006753 nucleoside phosphate metabolism 1 0.320887167235111 31
> [231]GO:0006754 ATP biosynthesis 1 0.320887167235111 31
> [232]GO:0016072 rRNA metabolism 1 0.320887167235111 31
> [233]GO:0030163 protein catabolism 7 0.32309211946386 450
> [234]GO:0008380 RNA splicing 2 0.325022718925153 94
> [235]GO:0044237 cellular metabolism 58 0.325330297713424 4454
> [236]GO:0043285 biopolymer catabolism 7 0.327128531185770 452
> [237]GO:0048513 organ development 12 0.327257730449142 828
> [238]GO:0001505 regulation of neurotransmitter levels 1
> 0.329327234661879 32
> [239]GO:0051247 positive regulation of protein metabolism 1
> 0.329327234661879 32
> [240]GO:0007517 muscle development 2 0.329574421807914 95
> [241]GO:0051270 regulation of cell motility 1 0.337663367549037 33
> [242]GO:0030334 regulation of cell migration 1 0.337663367549037 33
> [243]GO:0015698 inorganic anion transport 2 0.343178929408274 98
> [244]GO:0051336 regulation of hydrolase activity 1 0.345896833974532
> 34
> [245]GO:0006084 acetyl-CoA metabolism 1 0.345896833974532 34
> [246]GO:0046034 ATP metabolism 1 0.345896833974532 34
> [247]GO:0008632 apoptotic program 1 0.345896833974532 34
> [248]GO:0019935 cyclic-nucleotide-mediated signaling 1
> 0.345896833974532 34
> [249]GO:0006576 biogenic amine metabolism 1 0.345896833974532 34
> [250]GO:0006812 cation transport 5 0.348789634688633 314
> [251]GO:0042592 homeostasis 2 0.352201651297756 100
> [252]GO:0040012 regulation of locomotion 1 0.354028886689019 35
> [253]GO:0006865 amino acid transport 1 0.354028886689019 35
> [254]GO:0051325 interphase 1 0.362060763299379 36
> [255]GO:0051329 interphase of mitotic cell cycle 1 0.362060763299379
> 36
> [256]GO:0006445 regulation of translation 1 0.362060763299379 36
> [257]GO:0006119 oxidative phosphorylation 1 0.362060763299379 36
> [258]GO:0050795 regulation of behavior 1 0.362060763299379 36
> [259]GO:0044262 cellular carbohydrate metabolism 3 0.362391413510534
> 173
> [260]GO:0006334 nucleosome assembly 1 0.36999368645006 37
> [261]GO:0006986 response to unfolded protein 1 0.36999368645006 37
> [262]GO:0019320 hexose catabolism 1 0.377828864002271 38
> [263]GO:0006007 glucose catabolism 1 0.377828864002271 38
> [264]GO:0015837 amine transport 1 0.377828864002271 38
> [265]GO:0046365 monosaccharide catabolism 1 0.377828864002271 38
> [266]GO:0009145 purine nucleoside triphosphate biosynthesis 1
> 0.377828864002271 38
> [267]GO:0006887 exocytosis 1 0.377828864002271 38
> [268]GO:0009201 ribonucleoside triphosphate biosynthesis 1
> 0.377828864002271 38
> [269]GO:0009206 purine ribonucleoside triphosphate biosynthesis 1
> 0.377828864002271 38
> [270]GO:0046903 secretion 2 0.379005707491941 106
> [271]GO:0043037 translation 2 0.383430289306626 107
> [272]GO:0015980 energy derivation by oxidation of organic compounds 2
> 0.383430289306626 107
> [273]GO:0046164 alcohol catabolism 1 0.385567489211042 39
> [274]GO:0051338 regulation of transferase activity 1 0.393210740900192
> 40
> [275]GO:0045859 regulation of protein kinase activity 1
> 0.393210740900192 40
> [276]GO:0051242 positive regulation of cellular physiological process
> 4 0.4000676048694 259
> [277]GO:0051170 nuclear import 1 0.40075978363522 41
> [278]GO:0009199 ribonucleoside triphosphate metabolism 1
> 0.40075978363522 41
> [279]GO:0006752 group transfer coenzyme metabolism 1 0.40075978363522
> 41
> [280]GO:0009142 nucleoside triphosphate biosynthesis 1
> 0.40075978363522 41
> [281]GO:0009205 purine ribonucleoside triphosphate metabolism 1
> 0.40075978363522 41
> [282]GO:0006606 protein-nucleus import 1 0.40075978363522 41
> [283]GO:0044265 cellular macromolecule catabolism 7 0.400803201418615
> 488
> [284]GO:0005975 carbohydrate metabolism 4 0.402883276447584 260
> [285]GO:0051276 chromosome organization and biogenesis 3
> 0.406196195213966 186
> [286]GO:0009144 purine nucleoside triphosphate metabolism 1
> 0.408215767894137 42
> [287]GO:0048518 positive regulation of biological process 5
> 0.4107540332688 339
> [288]GO:0051246 regulation of protein metabolism 2 0.414013293381418
> 114
> [289]GO:0050877 neurophysiological process 5 0.418167364323166 342
> [290]GO:0007276 gametogenesis 2 0.418322869225769 115
> [291]GO:0001503 ossification 1 0.422853093469105 44
> [292]GO:0044275 cellular carbohydrate catabolism 1 0.422853093469105
> 44
> [293]GO:0031214 biomineral formation 1 0.422853093469105 44
> [294]GO:0046483 heterocycle metabolism 1 0.422853093469105 44
> [295]GO:0006790 sulfur metabolism 1 0.422853093469105 44
> [296]GO:0030005 di-, tri-valent inorganic cation homeostasis 1
> 0.422853093469105 44
> [297]GO:0016052 carbohydrate catabolism 1 0.422853093469105 44
> [298]GO:0009653 morphogenesis 13 0.423817045991623 969
> [299]GO:0008152 metabolism 60 0.425074355123386 4725
> [300]GO:0017038 protein import 1 0.430036666813042 45
> [301]GO:0009141 nucleoside triphosphate metabolism 1 0.430036666813042
> 45
> [302]GO:0006820 anion transport 2 0.435401062500306 119
> [303]GO:0009056 catabolism 9 0.436237605877526 662
> [304]GO:0015849 organic acid transport 1 0.437131646064332 46
> [305]GO:0009152 purine ribonucleotide biosynthesis 1 0.437131646064332
> 46
> [306]GO:0006575 amino acid derivative metabolism 1 0.437131646064332
> 46
> [307]GO:0046942 carboxylic acid transport 1 0.437131646064332 46
> [308]GO:0006916 anti-apoptosis 1 0.44413911375598 47
> [309]GO:0044257 cellular protein catabolism 6 0.444822568766349 431
> [310]GO:0006508 proteolysis and peptidolysis 6 0.444822568766349 431
> [311]GO:0002009 morphogenesis of an epithelium 1 0.451060139316777 48
> [312]GO:0006875 metal ion homeostasis 1 0.451060139316777 48
> [313]GO:0045786 negative regulation of cell cycle 1 0.451060139316777
> 48
> [314]GO:0007229 integrin-mediated signaling pathway 1
> 0.457895779228433 49
> [315]GO:0046849 bone remodeling 1 0.457895779228433 49
> [316]GO:0016051 carbohydrate biosynthesis 1 0.457895779228433 49
> [317]GO:0007010 cytoskeleton organization and biogenesis 4
> 0.461328665094566 281
> [318]GO:0006732 coenzyme metabolism 2 0.464633587244062 126
> [319]GO:0048522 positive regulation of cellular process 4
> 0.466805650972779 283
> [320]GO:0009117 nucleotide metabolism 2 0.468738176059802 127
> [321]GO:0044248 cellular catabolism 8 0.469615891512025 601
> [322]GO:0006164 purine nucleotide biosynthesis 1 0.471315064225532 51
> [323]GO:0006996 organelle organization and biogenesis 8
> 0.471515691364786 602
> [324]GO:0006325 establishment and/or maintenance of chromatin
> architecture 2 0.476891821144583 129
> [325]GO:0009150 purine ribonucleotide metabolism 1 0.477900758927221
> 52
> [326]GO:0016477 cell migration 2 0.480940534158342 130
> [327]GO:0007420 brain development 1 0.484405167513662 53
> [328]GO:0006091 generation of precursor metabolites and energy 5
> 0.503081665430808 377
> [329]GO:0000003 reproduction 2 0.508742542355795 137
> [330]GO:0006323 DNA packaging 2 0.508742542355795 137
> [331]GO:0019953 sexual reproduction 2 0.508742542355795 137
> [332]GO:0006974 response to DNA damage stimulus 2 0.508742542355795
> 137
> [333]GO:0006333 chromatin assembly or disassembly 1 0.509629641707654
> 57
> [334]GO:0030003 cation homeostasis 1 0.509629641707654 57
> [335]GO:0035295 tube development 1 0.515742291603265 58
> [336]GO:0006163 purine nucleotide metabolism 1 0.521779441840694 59
> [337]GO:0009108 coenzyme biosynthesis 1 0.521779441840694 59
> [338]GO:0009719 response to endogenous stimulus 2 0.528006863544315
> 142
> [339]GO:0050801 ion homeostasis 1 0.533630927805638 61
> [340]GO:0007156 homophilic cell adhesion 1 0.533630927805638 61
> [341]GO:0006873 cell ion homeostasis 1 0.533630927805638 61
> [342]GO:0051186 cofactor metabolism 2 0.535570442881854 144
> [343]GO:0006816 calcium ion transport 1 0.53944707789767 62
> [344]GO:0006643 membrane lipid metabolism 1 0.53944707789767 62
> [345]GO:0006811 ion transport 6 0.542260436877808 476
> [346]GO:0051169 nuclear transport 1 0.54519135732798 63
> [347]GO:0000902 cellular morphogenesis 2 0.550450298075617 148
> [348]GO:0006006 glucose metabolism 1 0.556467813184606 65
> [349]GO:0019932 second-messenger-mediated signaling 1
> 0.567467207381768 67
> [350]GO:0051188 cofactor biosynthesis 1 0.572865120670741 68
> [351]GO:0045595 regulation of cell differentiation 1 0.572865120670741
> 68
> [352]GO:0000278 mitotic cell cycle 2 0.58270739737953 157
> [353]GO:0007049 cell cycle 6 0.587267022757419 498
> [354]GO:0030001 metal ion transport 3 0.591857350907409 246
> [355]GO:0006417 regulation of protein biosynthesis 1 0.598869663507514
> 73
> [356]GO:0006913 nucleocytoplasmic transport 1 0.608826656474601 75
> [357]GO:0007046 ribosome biogenesis 1 0.613712930023149 76
> [358]GO:0009795 embryonic morphogenesis 1 0.618538725692032 77
> [359]GO:0009889 regulation of biosynthesis 1 0.618538725692032 77
> [360]GO:0044249 cellular biosynthesis 8 0.622974685528351 686
> [361]GO:0009059 macromolecule biosynthesis 5 0.629640528335274 434
> [362]GO:0016568 chromatin modification 1 0.641786179840726 82
> [363]GO:0042254 ribosome biogenesis and assembly 1 0.646264370901868
> 83
> [364]GO:0009792 embryonic development (sensu Metazoa) 1
> 0.650687090043173 84
> [365]GO:0001501 skeletal development 1 0.655055018059306 85
> [366]GO:0016337 cell-cell adhesion 1 0.65936882746755 86
> [367]GO:0006511 ubiquitin-dependent protein catabolism 1
> 0.65936882746755 86
> [368]GO:0030154 cell differentiation 5 0.663497466738233 451
> [369]GO:0019941 modification-dependent protein catabolism 1
> 0.663629182607504 87
> [370]GO:0048232 male gamete generation 1 0.671992147142357 89
> [371]GO:0007283 spermatogenesis 1 0.671992147142357 89
> [372]GO:0006629 lipid metabolism 4 0.676511183149224 369
> [373]GO:0007028 cytoplasm organization and biogenesis 1
> 0.688104971020042 93
> [374]GO:0016043 cell organization and biogenesis 8 0.689666446756732
> 728
> [375]GO:0007275 development 16 0.700554638377179 1420
> [376]GO:0048519 negative regulation of biological process 4
> 0.702808213339737 382
> [377]GO:0030097 hemopoiesis 1 0.703433250639631 97
> [378]GO:0007017 microtubule-based process 1 0.707147212714181 98
> [379]GO:0008202 steroid metabolism 1 0.707147212714181 98
> [380]GO:0015674 di-, tri-valent inorganic cation transport 1
> 0.707147212714181 98
> [381]GO:0006813 potassium ion transport 1 0.710815089442335 99
> [382]GO:0006412 protein biosynthesis 4 0.716327534048863 389
> [383]GO:0044255 cellular lipid metabolism 3 0.726044793802077 301
> [384]GO:0051243 negative regulation of cellular physiological process
> 3 0.730211709862049 303
> [385]GO:0009308 amine metabolism 2 0.731089355943429 207
> [386]GO:0009628 response to abiotic stimulus 2 0.731089355943429 207
> [387]GO:0009888 histogenesis 1 0.741843385774121 108
> [388]GO:0009058 biosynthesis 8 0.756440810621859 776
> [389]GO:0008283 cell proliferation 2 0.757081886506176 218
> [390]GO:0006954 inflammatory response 1 0.757631483251357 113
> [391]GO:0006631 fatty acid metabolism 1 0.760672352188259 114
> [392]GO:0000004 biological_process unknown 5 0.765045081992025 510
> [393]GO:0043118 negative regulation of physiological process 3
> 0.774657320509394 326
> [394]GO:0006281 DNA repair 1 0.778139795951323 120
> [395]GO:0007389 pattern specification 1 0.78639372298538 123
> [396]GO:0009893 positive regulation of metabolism 1 0.78639372298538
> 123
> [397]GO:0009613 response to pest, pathogen or parasite 2
> 0.802667765742295 240
> [398]GO:0042127 regulation of cell proliferation 1 0.804488522988784
> 130
> [399]GO:0048523 negative regulation of cellular process 3
> 0.80515991155731 344
> [400]GO:0006118 electron transport 2 0.820786492993454 250
> [401]GO:0006259 DNA metabolism 3 0.83495494848803 364
> [402]GO:0043207 response to external biotic stimulus 2
> 0.84367109106358 264
> [403]GO:0008610 lipid biosynthesis 1 0.848237404377743 150
> [404]GO:0051244 regulation of cellular physiological process 19
> 0.85123676510351 1848
> [405]GO:0050789 regulation of biological process 22 0.856743969914136
> 2116
> [406]GO:0050793 regulation of development 1 0.861132351931637 157
> [407]GO:0050791 regulation of physiological process 20
> 0.864702199069483 1956
> [408]GO:0009790 embryonic development 1 0.868007134997772 161
> [409]GO:0050794 regulation of cellular process 19 0.895241549128811
> 1923
> [410]GO:0006519 amino acid and derivative metabolism 1
> 0.898931855723648 182
> [411]GO:0006950 response to stress 4 0.909699240732213 541
> [412]GO:0006366 transcription from RNA polymerase II promoter 1
> 0.925567268012167 206
> [413]GO:0009611 response to wounding 1 0.928364024540067 209
> [414]GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid
> metabolism 18 0.95156160485475 1979
> [415]GO:0019752 carboxylic acid metabolism 1 0.978294617396122 302
> [416]GO:0006082 organic acid metabolism 1 0.978294617396122 302
> [417]GO:0009607 response to biotic stimulus 3 0.979374996094642 586
> [418]GO:0007166 cell surface receptor linked signal transduction 5
> 0.982439500182481 840
> [419]GO:0050874 organismal physiological process 6 0.983067517417278
> 956
> [420]GO:0009605 response to external stimulus 3 0.985446552524871 620
> [421]GO:0006955 immune response 1 0.994937631327918 414
> [422]GO:0019222 regulation of metabolism 9 0.995291225462625 1430
> [423]GO:0006355 regulation of transcription, DNA-dependent 7
> 0.997426260831645 1276
> [424]GO:0007186 G-protein coupled receptor protein signaling pathway 1
> 0.997508479166335 468
> [425]GO:0006351 transcription, DNA-dependent 7 0.997851716334804 1295
> [426]GO:0045449 regulation of transcription 7 0.99793236402813 1299
> [427]GO:0019219 regulation of nucleobase, nucleoside, nucleotide and
> nucleic acid metabolism 7 0.99806663960143 1306
> [428]GO:0006952 defense response 1 0.998569163710515 510
> [429]GO:0006350 transcription 7 0.998688605603821 1346
> [430]GO:0031323 regulation of cellular metabolism 7 0.998868447013235
> 1361
> [431]GO:0050896 response to stimulus 4 0.999501888491419 1065
> [432]GO:0008150 biological_process 108 1 8721
>
> References
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> 91. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009156
> 92. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006638
> 93. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006639
> 94. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0042552
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> 96. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0016070
> 97. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051049
> 98. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006915
> 99. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015992
> 100. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046486
> 101. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009161
> 102. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009124
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> 104. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006662
> 105. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0012501
> 106. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046907
> 107. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006821
> 108. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006396
> 109. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008344
> 110. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001508
> 111. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008637
> 112. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009123
> 113. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030041
> 114. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046879
> 115. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006595
> 116. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0017157
> 117. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007155
> 118. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0048468
> 119. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009260
> 120. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0016192
> 121. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008366
> 122. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001702
> 123. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030832
> 124. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0048489
> 125. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0048276
> 126. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009112
> 127. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0010003
> 128. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008064
> 129. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006672
> 130. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0042551
> 131. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006818
> 132. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006457
> 133. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008219
> 134. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043086
> 135. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051348
> 136. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008624
> 137. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007281
> 138. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006469
> 139. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046519
> 140. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009259
> 141. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0016265
> 142. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030534
> 143. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000160
> 144. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007154
> 145. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007582
> 146. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009953
> 147. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043087
> 148. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007269
> 149. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007626
> 150. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006897
> 151. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000723
> 152. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0045055
> 153. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001763
> 154. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043066
> 155. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043069
> 156. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007507
> 157. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006814
> 158. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009408
> 159. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007417
> 160. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015672
> 161. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0019319
> 162. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008154
> 163. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046364
> 164. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046165
> 165. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007611
> 166. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009116
> 167. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0016310
> 168. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000074
> 169. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001525
> 170. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006414
> 171. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006874
> 172. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009880
> 173. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0019725
> 174. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006725
> 175. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051128
> 176. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009266
> 177. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030855
> 178. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043119
> 179. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030900
> 180. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006665
> 181. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030100
> 182. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0044238
> 183. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006092
> 184. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007050
> 185. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007398
> 186. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007369
> 187. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006099
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> 189. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051258
> 190. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006468
> 191. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0048514
> 192. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0031175
> 193. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046356
> 194. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0045045
> 195. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043283
> 196. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000082
> 197. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015985
> 198. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015986
> 199. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0050790
> 200. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0035113
> 201. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009109
> 202. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0045333
> 203. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030324
> 204. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030326
> 205. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0019318
> 206. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0005996
> 207. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0035107
> 208. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0035108
> 209. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030323
> 210. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009057
> 211. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000398
> 212. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000375
> 213. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000377
> 214. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009165
> 215. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007001
> 216. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006928
> 217. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001568
> 218. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051187
> 219. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006066
> 220. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001944
> 221. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0040011
> 222. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006364
> 223. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0019933
> 224. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006836
> 225. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007165
> 226. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009887
> 227. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006096
> 228. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0035239
> 229. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0000226
> 230. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006753
> 231. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006754
> 232. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0016072
> 233. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030163
> 234. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008380
> 235. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0044237
> 236. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043285
> 237. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0048513
> 238. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0001505
> 239. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051247
> 240. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007517
> 241. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051270
> 242. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0030334
> 243. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015698
> 244. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051336
> 245. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006084
> 246. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046034
> 247. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0008632
> 248. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0019935
> 249. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006576
> 250. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006812
> 251. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0042592
> 252. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0040012
> 253. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006865
> 254. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051325
> 255. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051329
> 256. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006445
> 257. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006119
> 258. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0050795
> 259. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0044262
> 260. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006334
> 261. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006986
> 262. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0019320
> 263. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006007
> 264. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015837
> 265. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046365
> 266. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009145
> 267. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006887
> 268. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009201
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> 270. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046903
> 271. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0043037
> 272. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0015980
> 273. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046164
> 274. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051338
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> 278. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009199
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> 285. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051276
> 286. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009144
> 287. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0048518
> 288. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0051246
> 289. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0050877
> 290. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007276
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> 294. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046483
> 295. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006790
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> 301. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009141
> 302. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006820
> 303. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0009056
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> 307. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046942
> 308. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006916
> 309. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0044257
> 310. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0006508
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> 313. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0045786
> 314. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007229
> 315. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0046849
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> 327. http://arrays.ucsf.edu/cgi-bin/oligo_db.pl?oligo=GO:0007420
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>
>
> ------------------------------------------------------------------------
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Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
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