[BioC] Error while installing genefilter package

Francois Pepin fpepin at cs.mcgill.ca
Mon Oct 10 21:58:10 CEST 2005

Hi Nayeem,

The line:
 make: f95: Command not found
shows what the problem is.

you're missing a fortran compiler in there, is it possible that this is
not the same machine as you compiled R with in the first place?

GCC can handle fortran compilation, but I'm not quite sure where you
would have to change those settings.

Maybe someone can offer some better help with this.


On Mon, 2005-10-10 at 13:39 -0600, Nayeem Quayum wrote:
> Hello to everybody.. I am trying to install genefilter package from R using
> the command
> biocLite("genefilter")
> but it gave me error
> * Installing *source* package 'genefilter' ...
> ** libs
> gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -fomit-frame-pointer
> -pipe -march=i586 -mtune=pentiumpro -c genedist.c -o genedist.o
> gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -fomit-frame-pointer
> -pipe -march=i586 -mtune=pentiumpro -c init.c -o init.o
> gcc -I/usr/lib/R/include -I/usr/local/include -fPIC -O2 -fomit-frame-pointer
> -pipe -march=i586 -mtune=pentiumpro -c rowttests.c -o rowttests.o
> f95 -fPIC -O2 -fomit-frame-pointer -pipe -march=i586 -mtune=pentiumpro -c
> ttest.f -o ttest.o
> make: f95: Command not found
> make: *** [ttest.o] Error 127
> ERROR: compilation failed for package 'genefilter'
> ** Removing '/usr/lib/R/library/genefilter'
> ** Restoring previous '/usr/lib/R/library/genefilter'
> The downloaded packages are in
> /root/tmp/RtmpE11972/downloaded _packages
> Warning message:
> installation of package 'genefilter' had non-zero exit status in:
> install.packages(pkgs = "genefilter", repos = c("
> http://www.bioconductor.org/packages/bioc/stable",
> I am running R in Mandriva. Please any body help me out how to solve this
> problem. Thanks.
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