[BioC] alternate /tmp for Bioconductor install
Robert Citek
rwcitek at alum.calberkeley.org
Fri May 20 08:47:40 CEST 2005
On May 20, 2005, at 12:13 AM, Seth Falcon wrote:
> Sorry for the delay in response. We've been busy preparing the
> Bioconductor 1.6 release.
No worries. Thanks for the reply. And thanks to you and everyone
else involved in making 1.6.
> Robert Citek <rwcitek at alum.calberkeley.org> writes:
>
>> I'm attempting to install Bioconductor under Debian following the
>> instructions here:
>>
>> http://www.bioconductor.org/faq.html#getBioC
>>
>> Apparently, I don't have enough room in /tmp to untar the tar files.
>> What is the "R way" to specify an alternate /tmp folder to use while
>> installing Bioconductor? "export TMPDIR=" comes to mind.
>>
>
> Yes, exporting TMPDIR should result in files downloaded by getBioC
> being placed in TMPDIR.
Great. I'll give that a shot in the morning.
Since I last posted, my short-term work around was to create a soft-
link, pointing /tmp to a partition with more room. Once I did that
BioC seemed to hum along nicely. Since I did this on Thursday night,
I suspect that I've already installed BioC 1.6.
Regards,
- Robert
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