[BioC] How to get p.value from siggenes result?

[Holger Schwender]

Hi Yanqin,

you get the p.values of the all the genes by

sam.out at p.value

and the p.values of the significant genes by

samList$mat.sig[,"p.value"]

But please note that these are raw p-values, i.e. p-values that are not
adjusted for multiplicity.

Best,
Holger


> --- Ursprüngliche Nachricht ---
> Von: Yanqin Yang <yanqin_yang at yahoo.com>
> An: bioconductor at stat.math.ethz.ch
> Betreff: [BioC] How to get p.value from siggenes result?
> Datum: Thu, 12 May 2005 09:51:26 -0700 (PDT)
> 
> Hello,
>  
> The following code only give me the p.value of significant genes: 
> sam.out = sam ( e, cl )
> samList = summary(sam.out, 1.0)
> samList $mat.sig$p.value
> Would anyone kindly tell me how to get whole list of p.value from siggenes
> sam.out result?
>  
> Thanks a lot!
>  
> Yanqin
> 
> 
> 		
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