[BioC] GCRMA error

[Zhijin Wu]

Do you see "rnu34probe" when you do
 
search()

If yes, what do you get if you do 

P <-get("rnu34probe")

On Tue, 10 May 2005, Puhong Gao wrote:

> Hi, Zhijin and Jim,
> 
> Thank you both for your quick input.
> 
> Indeed, R automatically initiated the installation of "rnu34cdf" and 
> "rnu34probe" when I first ran GCRMA. Since I got the posted error, I 
> manually  installed rnu34 packages downloaded from Bioconductor site and got 
> the same error when GCRMA was run. I did check the package names and found 
> no problem. By the way, I ran GCRMA on rgu34a chip data without problem 
> yesterday. Is there anything else I should check? Thank you.
> 
> Best,
> 
> Puhong
> 
> ----- Original Message ----- 
> From: "Zhijin Wu" <zwu at jhsph.edu>
> To: "Puhong Gao" <pgao at hunter.cuny.edu>
> Cc: <bioconductor at stat.math.ethz.ch>
> Sent: Tuesday, May 10, 2005 3:00 PM
> Subject: Re: [BioC] GCRMA error
> 
> 
> > Please check the probepackage name and cdfpackage name for your chip type
> > first.
> > The ones provided on bioconductor usually have names like
> > "CHIPcdf" and "CHIPprobe" where CHIP is the chip type such as "hgu133a".
> > If your probe package is created with a name following different
> > convention, gcrma may not recognize it.
> >
> >
> > On Tue, 10 May 2005, Puhong Gao wrote:
> >
> >> Hi, all,
> >>
> >> When I ran my old chip data (RN U34 chips) with gcrma, I got the 
> >> following error. I had no problem with other chip types. Can someone give 
> >> me some inputs on this? Thank you.
> >>
> >> > gcrma.ob<-gcrma(ob)
> >> Computing affinitiesError in get(x, envir, mode, inherits) : variable 
> >> "rnu34probe" was not found
> >>
> >> I am using R 2.0.1 and gcrma 1.1.3.
> >>
> >> Best,
> >>
> >> Puhong
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> _______________________________________________
> >> Bioconductor mailing list
> >> Bioconductor at stat.math.ethz.ch
> >> https://stat.ethz.ch/mailman/listinfo/bioconductor
> >> 
>