[BioC] Defining your own chromosome annotations

[Sean Davis]

Lance,

You probably want to look at the AnnBuilder package, but I don't think it 
supports bacterial genomes (? for Jianhua).  However, what is the annotation 
that you have for each "gene"?  Genbank accession?  Refseq?  Do you have the 
chromosome locations?  What arrays are you using?

Sean

----- Original Message ----- 
From: "Palmer, Lance" <palmer at cshl.edu>
To: <bioconductor at stat.math.ethz.ch>
Sent: Monday, May 02, 2005 11:09 AM
Subject: [BioC] Defining your own chromosome annotations


>I am working with a number of bacterial genomes.  I would like to define my 
>own chromosome and annotations along the chromosomes, then view gene 
>expression with regards to these genes.  geneplotter and annotate seem to 
>use already available data structures.  Is there a way for a use to design 
>there own?
>
> Thanks
> Lance Palmer
>
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