[BioC] wrong format in GOTERM

fhong@salk.edu fhong at salk.edu
Sat Jun 25 01:46:19 CEST 2005


Dear list;

I am using package GO and try to extract goterm for some genes.
> mget("GO:0008372", GOTERM)

>From my record, I would get the following output before
> mget("GO:0008372", GOTERM)

$"GO:0008372"
GOID = GO:0008372
Term = cellular_component unknown
Definition = Used for the annotation of gene products whose
     localization is not known or cannot be inferred.
Ontology = CC

But I don't know what happened, not it only gives me
> mget("GO:0008372", GOTERM)
$"GO:0008372"
list()
attr(,"GOID")
[1] "GO:0008372"
attr(,"Term")
[1] "cellular_component unknown"
attr(,"Synonym")
[1] NA
attr(,"Secondary")
character(0)
attr(,"Definition")
[1] "Used for the annotation of gene products whose localization is not
known or cannot be inferred."
attr(,"Ontology")
[1] "CC"
attr(,"class")
[1] "GOTerms"
attr(,"class")attr(,"package")
[1] "annotate"

And I wouldn't extract Term information out from this format, anyone can
help me to resolve this puzzle?

Thanks in advance!

fangxin



--------------------
Fangxin Hong  Ph.D.
Plant Biology Laboratory
The Salk Institute
10010 N. Torrey Pines Rd.
La Jolla, CA 92037
E-mail: fhong at salk.edu
(Phone): 858-453-4100 ext 1105



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