[BioC] memory problem with fitPLM in package affyPLM

[Ben Bolstad]

> > try something like
> >
> > boxplot(Pset,ylim=c(0.9, 1.2))
> Does this mean for version 1.3.3, you set up a ylim for both boxplots (RLE
> and NUSE). The new RLE and NUSE plots I got from version 1.3.3 look
> different from the ones from version 1.2.5, the extremem outliers didn't
> show up in the former.
> 

In version 1.3.3 RLE() and NUSE() should be used in preference to the
Mbox() and boxplot() commands you used previously. Additionally, both
RLE() and NUSE() have sensibly chosen default ylim.

Ben
-- 
Ben Bolstad <bolstad at stat.berkeley.edu>
http://www.stat.berkeley.edu/~bolstad