[BioC] how to get the normalized genes expression values with vsn
diego huck
diegolugro at yahoo.com.ar
Wed Jun 1 09:27:50 CEST 2005
Hello
I normalized a data.frame with genes in rows and conditions in columns
with vsn
genormalized <- vsn(ge)
latter I tried to get the normalized values with the following command
but I didn't get the result I need
genormalized$exprs
NULL
furthermore I would like to save the normalized expression data in a
text file
I am tried
write.table(genormalized, file= "genormalized.txt", sep="\t")
the file was like
"exprs" "genenames"
"1" 4.13499853 "1"
"2" 3.88214458 "2"
"3" 5.84832486 "3"
"4" 5.72530643 "4"
"5" 5.61469995 "5"
"6" 5.24160113 "6"
"7" 6.23749504 "7"
"8" 5.10511033 "8"
"9" 7.07843853 "9"
"10" 5.89613219 "10"
"11" 4.43254412 "11"
"12" 4.90566019 "12"
"13" 6.99090268 "13"
"14" 7.61601114 "14"
"15" 6.21445251 "15"
"16" 6.15866330 "16"
......................
how can I do to obtain the data in format that i want, like a data.frame
or a matrix
best regards
diego
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