[BioC] limma error message

[Jianping Jin]

Thanks Naomi! Could you explain how to specify parameter "layout"?
JP-

--On Thursday, July 28, 2005 3:35 PM -0400 Naomi Altman 
<naomi at stat.psu.edu> wrote:

> I got this message when I used the wrong layout file.
>
> --Naomi
>
> At 03:03 PM 7/28/2005, Jianping Jin wrote:
>> Dear BioConductor list,
>>
>> I got an error, Error: subscipt out of bounds, when I started to run a
>> limma program normalizeWithinArrays(). What I wanted to do was to
>> normalize eight cDNA slides. >dim(RG): 34970      8.
>>
>> I used >debug(normalizeWithinArrays) and then >normalizeWithinArrays(RG)
>> to debug by either Browse[1]> n or c as well. But when I retried the
>> program it gave me the same error message above.
>>
>> I will highly appreciate it if any one could give it shot.
>>
>>
>> Best regards!
>>
>> JP-
>>
>> xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
>> x Jianping Jin Ph.D.            x
>> x Bioinformatics scientist      x
>> x Center for bioinformatics     x
>> x 3133 Bioinformatics Building  x
>> x CB# 7104                      x
>> x University of North Carolina  x
>> x Chapel Hill, NC 27599         x
>> x Tel: (919)843-6105            x
>> x Fax: (919)843-3103            x
>> x E-mail: jjin at email.unc.edu    x
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>>
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>
> Naomi S. Altman                                814-865-3791 (voice)
> Associate Professor
> Bioinformatics Consulting Center
> Dept. of Statistics                              814-863-7114 (fax)
> Penn State University                         814-865-1348 (Statistics)
> University Park, PA 16802-2111
>



xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
x Jianping Jin Ph.D.            x
x Bioinformatics scientist      x
x Center for bioinformatics     x
x 3133 Bioinformatics Building  x
x CB# 7104                      x
x University of North Carolina  x
x Chapel Hill, NC 27599         x
x Tel: (919)843-6105            x
x Fax: (919)843-3103            x
x E-mail: jjin at email.unc.edu    x
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx