[BioC] Geo GDS parser availability

Saurin D. Jani jani at musc.edu
Wed Jul 27 21:06:02 CEST 2005


Hi Sean,

Try to see on this page:
http://proteogenomics.musc.edu/quickSite/arrayQuest.php?page=home&act=manage&process=Methods_Library_List

Method number 14 does GEO analysis for TWO condition experiment and it also
parses GDS SOFT file. There is an R script. 

Saurin 



Quoting Sean Davis <sdavis2 at mail.nih.gov>:

> Not entirely BioConductor related, but I'll ask:
> 
> Does anyone know of a GEO (gene expression omnibus) GDS parser (R, 
> perl, or otherwise)?
> 
> Thanks,
> Sean
> 
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