[BioC] Analisys with MAS5 and affyPLM
pbotias at bio.ucm.es
Wed Jul 27 11:15:43 CEST 2005
I would like to carry out a similar analysis of data to which carries out
affylmGUI, but with standard sign data with MAS5, and to carry out a
statistical eBayes to the carried out contrast the same as in affylmGUI.
Serious this correct?
I have tried to carry out it but I find that the data that I obtain are not
correct or distance much of the analysis that I have carried out with GCRMA
These are my chips:
I have two you reply of each condition. And I want to carry out the
mtl1 vs wt
mtl1.diam vs mtl1
wt.diam vs wt
This is the script that I have used for the analysis, noticing limma user's
>design = model.matrix(~factor(strain))
>colnames(design) = c("mtl1.diam","mtl1","wt","wt.diam")
Not you if there is something in the design of the analysis that I make bad.
I thank all their help.
Pedro Botías Talamantes
Unidad de Genómica
Parque Científico de Madrid-UCM
Facultad CC Biológicas- Planta sótano
Universidad Complutense de Madrid
Tel: 91 3945036
FAX 91 3944883
e-mail: pbotias at bio.ucm.es
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