[BioC] Limma Users' Guide - ndups, blocks p. 25

[Naomi Altman]

I just went into the duplicateCorrelation code, and I am even more 
confused.  The code appears to set ndups=1 whenever block is not NULL, so 
how could I get a different answer from:

corfit=duplicateCorrelation(fData[,2:7], design, ndups=2, block=c(1,1,2,2,3,3))

and

corfit=duplicateCorrelation(fData[,2:7], design, ndups=1, block=c(1,1,2,2,3,3))


Naomi S. Altman                                814-865-3791 (voice)
Associate Professor
Bioinformatics Consulting Center
Dept. of Statistics                              814-863-7114 (fax)
Penn State University                         814-865-1348 (Statistics)
University Park, PA 16802-2111