[BioC] (no subject)

Ting-Yuan Liu (FHCRC) tliu at fhcrc.org
Mon Jul 18 18:56:27 CEST 2005


Hi Chen,

I can not reproduce the same error in my Linux machine.  Could you give us 
more details about the version of R and BioConductor you are using?  You can use 
"sessionInfo()" to get these information.

Ting-Yuan

PS. Here is how I test this problem:

> library(hgu95aprobe)
Loading required package: matchprobes
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
         Vignettes contain introductory material.  To view,
         simply type: openVignette()
         For details on reading vignettes, see
         the openVignette help page.
Loading required package: affy
Loading required package: reposTools
> library(hgu133atagprobe)
> sessionInfo()
R version 2.1.1, 2005-06-28, x86_64-unknown-linux-gnu

attached base packages:
[1] "tools"     "methods"   "stats"     "graphics"  "grDevices" "utils"
[7] "datasets"  "base"

other attached packages:
hgu133atagprobe     hgu95aprobe     matchprobes            affy      
reposTools
        "0.0.1"           "1.0"        "1.0.22"         "1.6.7"        
"1.5.19"
        Biobase
       "1.5.12"
>                                                                                         

On Mon, 18 Jul 2005, Chen Li wrote:

> Dear bioconductor users,
>  
>             I try to use gcrma to analyze hgu133atag and hgu95a
> Affymetrix genechip data, I downloaded hgu133atagprobe and hgu95aprobe
> packages from the website
> (http://bioconductor.org/data/probes/Packages/html/hgu133atagprobev0.0.1
> .html, source package download) and then installed them in Linux system.
> But when I load both packages, hgu95aporbe is fine, but hgu133atagprobe
> get error message:
>  
> > library(hgu95aprobe)
> > library(hgu133atagprobe)
> Error in .find.package(package, lib.loc, verbose = verbose) :
>         none of the packages were found
> Error in library(hgu133atagprobe) : .First.lib failed
>  
> Anyone got the similar problem and how to solve this problem?
>  
> Regards
>  
> Chen 
>  
>  
> ******************************************
> Dr. Chen Li
> Post Doctoral Research Fellow
> Systems Biology
> Bioinformatics Institute
> Tel: 64788319  
> Fax: 64789048
> ******************************************
>  
> 
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> 
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