[BioC] filtering for present calls
Garcia, Joshua A
garciaj14 at uthscsa.edu
Fri Jul 15 17:35:16 CEST 2005
I am using the gcrma package in R to analyze affymetrix HGu133A chips and
would like to normalize only the probes called present by GCOS. I can
separate the probes called present from the rest by using the chp file
exported to excel, however, I would need to recreate it as a .cel file for use
in R. Is it possible to do this? Is it possible to use an excel file in R,
rather than a .cel file? Any suggestions? Any help would be much
appreciated.
Thanks,
Josh
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