[BioC] Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf

[Crispin Miller]

Hi Dick,
I'll have a look and get back to you...
The problem is with inconsistencies in array names - out of interest,
what does cdfName(exp1.all.raw) give you?
Cheers,

Crispin


-----Original Message-----
From: bioconductor-bounces at stat.math.ethz.ch
[mailto:bioconductor-bounces at stat.math.ethz.ch] On Behalf Of Dick Beyer
Sent: 08 July 2005 17:25
To: Bioconductor
Subject: [BioC] Error in qc.affy(unnormalised, ...) : I'm sorry, I do
not know about chip type: moe430acdf

I am getting an error running simpleaffy on some moe430a chips:


> qc <- qc(exp1.all.raw,exp1.mas5)
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about
chip type: 
moe430acdf
> exp1.all.raw
AffyBatch object
size of arrays=712x712 features (47532 kb) cdf=MOE430A (22690 affyids)
number of samples=12 number of genes=22690 annotation=moe430a
> sessionInfo()
R version 2.1.1, 2005-06-20, i386-pc-mingw32 

attached base packages:
[1] "tools"     "methods"   "stats"     "graphics"  "grDevices"
[6] "utils"     "datasets"  "base"     

other attached packages:
  simpleaffy        limma     siggenes       qvalue 
    "2.0.13"      "2.0.2"     "1.2.17"        "1.1" 
       gcrma moe430aprobe  matchprobes         affy 
     "1.1.4"        "1.1"     "1.0.22"      "1.6.7" 
  reposTools   moe430acdf      moe430a      annaffy 
    "1.5.19"      "1.5.1"      "1.8.5"     "1.0.18" 
        KEGG           GO      Biobase 
     "1.6.5"      "1.6.5"     "1.5.12"

Back on January 19th, Crispin Miller told me that this was probably
fixed in simpleaffy 2.07.  I'm hoping someone could check this out
again, or notice what I am doing wrong.

Thanks very much,
Dick
************************************************************************
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Richard P. Beyer, Ph.D.	University of Washington
Tel.:(206) 616 7378	Env. & Occ. Health Sci. , Box 354695
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http://depts.washington.edu/ceeh/ServiceCores/FC5/FC5.html
http://staff.washington.edu/~dbeyer

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