[BioC] [Limma] annotation (probeids) and as.environment
Claudia Molina
ramos.beatriz at gmail.com
Tue Dec 27 12:36:11 CET 2005
Hello and merry christmas!
I'm trying to make automatically these commands
library(annaffy)
library(moe430a)
probeids <- ls(moe430aSYMBOL)
probeids[1:2]
*If I write the below script, everything is allrigth:
x<-moe430aSYMBOL
is.environment(x) #check that "x" object is an environment
[1] TRUE
probeids <- ls(x) #store probe names of "moe430a" in probeids
object
*but if I write:
library(annaffy)
library(pkg, character.only = TRUE)
x<-paste(pkg,"SYMBOL",sep="")
is.environment(x)
[1] FALSE
probeids <- ls(x)
where "pkg" is "moe430a"
appears the next message:
<< Error in as.environment(pos) : no item called "moe430aSYMBOL" in
the search list >>
*I have also tried
probeids <- objects(paste(pkg,"SYMBOL",sep=""))
<< Error in as.environment(pos) : no item called
"moe430aSYMBOL" in the search list >>
and
x<-paste(pkg,"SYMBOL",sep="")
as.environment(x)
<< Error in as.environment(x) : no item called
"moe430aSYMBOL" in the search list >>
but they don't work and I need all the commands are automatic (I can't
write "x<-moe430aSYMBOL" because my script is inside another and I won't
know the name of the package 'a priori')
Thanks!!!
Claudia
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