[BioC] how to get samoutput$mat.fdr,
saurin_jani at yahoo.com
Thu Dec 22 15:22:44 CET 2005
Thank you so much for useful hint.
Have a great weekend and happy holidays,
--- Naomi Altman <naomi at stat.psu.edu> wrote:
> The following commands are very helpful:
> lists all the components in the object.
> gives the classname(s) such as SAMout or whatever.
> Then ?SAMout
> usually says what is in the object.
> At 08:04 AM 12/22/2005, Sean Davis wrote:
> >On 12/22/05 7:53 AM, "Saurin Jani"
> <saurin_jani at yahoo.com> wrote:
> > > Dear BioC,
> > >
> > > I am using siggenes package. If anyone have
> > > please let me know, how can I get access of all
> > > samoutput$fdr and samoutput$delta values from
> > > samoutput object?
> > >
> > > This might be very easy..but and even I have
> > > opened Vignette but there is not information in
> > > Vignette as well.(sam.out$mat.fdr gives NULL)
> >I haven't used SAM in a while, but have you tried:
> >That will give you the structure of the sam.out
> object and may give you a
> >hint about where to look.
> >Bioconductor mailing list
> >Bioconductor at stat.math.ethz.ch
> Naomi S. Altman
> 814-865-3791 (voice)
> Associate Professor
> Dept. of Statistics
> 814-863-7114 (fax)
> Penn State University
> 814-865-1348 (Statistics)
> University Park, PA 16802-2111
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