[BioC] creating cdf environment Correction

Carol Hannam channam at uoguelph.ca
Wed Aug 31 20:18:28 CEST 2005

OOPS - so sorry, but I made a mistake in copying the script of my previous
email. Here is the correct version:

Could someone please spot the error that I am making in creating a cdf

> library(affy)
> library(makecdfenv)
> pname<-cleancdfname(whatcdf("YY002001.cel"))
> list(pname)
[1] "xxxx007a46cdf"

> xxxx007a46cdf<-make.cdf.env("xxxx007a46.cdf")
Reading CDF file.
Creating CDF environment
Wait for about 827 dots.......
> length(ls(xxxx007a46cdf))
[1] 82661
> eset<-justRMA()
Note: Using download type: Win32
Error in getCdfInfo(object) : Could not obtain CDF environment, problems
Specified environment specified did not contain XXXX007a46
Library - package xxxx007a46cdf not installed
Data for package affy did not contain XXXX007a46
Bioconductor - xxxx007a46cdf not available

Thanks for your help, again.
C. Hannam

More information about the Bioconductor mailing list