[BioC] creating cdf environment Correction
Carol Hannam
channam at uoguelph.ca
Wed Aug 31 20:18:28 CEST 2005
OOPS - so sorry, but I made a mistake in copying the script of my previous
email. Here is the correct version:
Could someone please spot the error that I am making in creating a cdf
environment?
> library(affy)
> library(makecdfenv)
> pname<-cleancdfname(whatcdf("YY002001.cel"))
> list(pname)
[[1]]
[1] "xxxx007a46cdf"
> xxxx007a46cdf<-make.cdf.env("xxxx007a46.cdf")
Reading CDF file.
Creating CDF environment
Wait for about 827 dots.......
> length(ls(xxxx007a46cdf))
[1] 82661
> eset<-justRMA()
Note: Using download type: Win32
Error in getCdfInfo(object) : Could not obtain CDF environment, problems
encountered:
Specified environment specified did not contain XXXX007a46
Library - package xxxx007a46cdf not installed
Data for package affy did not contain XXXX007a46
Bioconductor - xxxx007a46cdf not available
Thanks for your help, again.
C. Hannam
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