[BioC] creating cdf environment

Carol Hannam channam at uoguelph.ca
Wed Aug 31 20:01:45 CEST 2005


Hello everyone:
Could someone please spot the error that I am making in creating a cdf
environment?

> library(affy)
> library(makecdfenv)
> pname<-cleancdfname(whatcdf("YY002001.cel"))
> list(pname)
[[1]]
[1] "xxxx007a46cdf"

> xxxx007a46cdf<-make.cdf.env("xxxx007a46.cdf")
Reading CDF file.
Creating CDF environment
Wait for about 827 dots.......
> length(ls(xxxx007a46cdf))
[1] 82661
> eset<-justRMA()
Note: Using download type: Win32
Error in getCdfInfo(object) : Could not obtain CDF environment, problems
encountered:
Specified environment specified did not contain SYNG007a520046
Library - package syng007a520046cdf not installed
Data for package affy did not contain SYNG007a520046
Bioconductor - syng007a520046cdf not available

Thanks for your help.
C. Hannam



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