[BioC] update packages problem
Ivan Baxter
ibaxter at purdue.edu
Sat Aug 27 00:14:13 CEST 2005
Hello all- I am having a recurring problem when I try to update packages
from bioc.
It appears to stop at the transfer step (see below).
I am running R 2.1.1 on windows XP. Any help or suggestions would be
appreciated.
thanks
Ivan
> update.packages(CRAN = getOption("BIOC"))
> update.packages()
--- Please select a CRAN mirror for use in this session ---
lattice :
Version 0.12-1 installed in C:/R/rw2011/library
Version 0.12-5 available at http://rh-mirror.linux.iastate.edu/CRAN
Update (y/N/c)? y
limma :
Version 2.0.2 installed in C:/R/rw2011/library
Version 2.0.4 available at http://rh-mirror.linux.iastate.edu/CRAN
Update (y/N/c)? y
trying URL
'http://rh-mirror.linux.iastate.edu/CRAN/bin/windows/contrib/2.1/lattice_0.12-5.zip'
Content type 'application/zip' length 713040 bytes
opened URL
downloaded 696Kb
trying URL
'http://rh-mirror.linux.iastate.edu/CRAN/bin/windows/contrib/2.1/limma_2.0.4.zip'
Content type 'application/zip' length 1312391 bytes
opened URL
downloaded 1281Kb
package 'lattice' successfully unpacked and MD5 sums checked
package 'limma' successfully unpacked and MD5 sums checked
The downloaded packages are in
C:\Documents and Settings\Ivan\Local
Settings\Temp\Rtmp23662\downloaded_packages
updating HTML package descriptions
Warning messages:
1: unable to move temporary installation
'C:\R\rw2011\library\file22121\lattice' to 'C:\R\rw2011\library\lattice'
2: unable to move temporary installation
'C:\R\rw2011\library\file1458\limma' to 'C:\R\rw2011\library\limma'
More information about the Bioconductor
mailing list