[BioC] spottypes file problem

[scholz@Ag.arizona.edu]

Hi,

R2.1.1
WindowsXP

For some reason when I read my STF into limma, only the default spot type is
being found. The result looks like this:

Matching patterns for: ID Name 
Found 27339 oligo 
Found 0 3XSSC 
Found 0 Alien 
Found 0 Blank 
Found 0 Human 
Found 0 Control 
Setting attributes: values Color 

I'm sure this is some stupid formatting error, but I've been careful to compose
a file that conforms to the manual and can't see what the problem is. Has anyone
else experienced this? Here's what my file looks like:

SpotType	ID	Name	Color
oligo	*	*	black
3XSSC	3XSSC	*	red
Alien	Alien*	*	blue
Blank	Blank	*	red
Human	H*	*	blue
Control	*Control*	*	yellow



THanks

Matt

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