[BioC] problem with expresso() in affy package
Chunrong Dong
chunrong.dong at case.edu
Tue Aug 9 18:21:27 CEST 2005
Dear there:
When I reduce probe-level data to expression-level data, I tried
exprs_norm <- expresso (cels,
bgcorrect.method="none",
normalize.method="invariantset",
pmcorrect.method="subtractmm",
summary.method="liwong")
and
exprs_norm <- expresso (cels,
bgcorrect.method="none",
normalize.method="invariantset",
pmcorrect.method="mas",
summary.method="liwong")
Both gave me exactly the same result. It indicates that the two
pmcorrect.methods "subtractmm" and "mas" works the same which is not
reasonable.
Could anyone help me with this please?
Thanks.
Chunrong
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