[BioC] problem with hgu133a // GOstats // BioC-R2.1.1
jzhang at jimmy.harvard.edu
Tue Aug 2 15:40:49 CEST 2005
>Where can I find the graph package (I haven't found it on the CRAN website)?
You can get the graph package from Bioconductor.
>*question 2: hgu133a*
>Is it possible that the hgu133a package is not up to date: for example
>when I give the command aafSymbol("213268_at","hgu133a") following
>/*PER3 */when I use R 2.1.1 (with recent installation of BioC:
>getBioC()) and */UTS2/* when I use R 2.0.1 (with recent installation of
>BioC: getBioC("all")). However, on the Ensembl website 213268_at =
We rely on NCBI for annnotation. 213268_at is annotated to Z98884 by Affymetrix
and UniGene says it is PER3.
>Another error message appears with R 2.0.1 when I give the command:
>Loading required package: reposTools
> "_You have package hgu133a but the incorrect version_"
>An object of class "aafList"
>An object of class "aafSymbol"
>*question 3: BioC-R2.1.1*
>The commands Install or Update packages from Bioconductor under the
>Packages menu-command-bar is not available anymore in the R2.1.1 version
>compared to the R2.0.1 version? Is it normal or did I forgot something
>when I installed BioC or R?
>Thank you in advance,
>*dr. ir. Katleen De Preter*
>Center for Medical Genetics Ghent (CMGG)
>Ghent University Hospital
>Medical Research Building (MRB), 2nd floor, room 120.038
>De Pintelaan 185, B-9000 Ghent, Belgium
>+32 9 240 5533 (phone) | +32 9 240 6549 (fax)
>Katleen.DePreter at UGent.be <mailto:Katleen.DePreter at UGent.be>
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