[BioC] globaltest : geneplot & sample plot
saurin_jani at yahoo.com
Wed Oct 27 21:22:22 CEST 2004
> path1 <- kegg[["00280"]];
> globaltest_all <-
= path1,model = "logistic");
> geneplot(globaltest_all,labelsize = 1);
here, it shows only 1 gene(145512_at) out of my all 6
samples. I have 3 Knock Out and 3 Wild Type samples.
> sampleplot(globaltest_all,labelsize = 1);
here, I can see all 6 sample plots look similar ,
Knock out and Wild Type. Very less difference.
I think , it should only show Knock out sample at
Am I doing something wrong or I have wrong
undertanding..about sampleplot and geneplots. (or Need
to read more about that)
Please let me know..if anyone..!
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