[BioC] problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0

[Goeman, J.J. (MSTAT)]

Hi,

I'm trying to install Bioconductor on R 2.0.0 (windows version). I get some
strange errors

I first try the release version:

> source("http://www.bioconductor.org/getBioC.R")
> getBioC()
Running getBioC version 1.2.65....
If you encounter problems, first make sure that
you are running the latest version of getBioC()
which can be found at: www.bioconductor.org/getBioC.R

Please direct any concerns or questions to bioconductor at stat.math.ethz.ch.

[1] "Installing reposTools ..."
Loading required package: reposTools 
Error in library(package, character.only = TRUE, logical = TRUE,
warn.conflicts = warn.conflicts,  : 
        'reposTools' is not a valid package -- installed < 2.0.0?

Maybe I shouldn't use the release version on 2.0.0? Then I try the
developmental version:

> getBioC(develOK=TRUE)
Running getBioC version 1.2.65....
If you encounter problems, first make sure that
you are running the latest version of getBioC()
which can be found at: www.bioconductor.org/getBioC.R

Please direct any concerns or questions to bioconductor at stat.math.ethz.ch.

[1] "Installing reposTools ..."
Loading required package: reposTools 
Loading required package: tools 
[1] "Test:"
NULL
Error in getBioC(develOK = TRUE) : 
default:        targets affy, cdna and exprs.
exprs:          packages Biobase, annotate, genefilter, geneploter, edd, 
                ROC, multtest, pamr vsn, and limma.
affy:           packages affy, affydata, annaffy, affyPLM, makecdfenv,
                and matchprobes plus 'exprs'.
cdna:           packages marray, vsn, plus 'exprs'.
prog:           packages graph, hexbin, externalVector.
graph:          packages graph, Rgraphviz, RBGL
widgets:        packages tkWidgets, widgetTools, DynDoc.
design:         packages daMA and factDesign
externalData:   packages externalVector and rhdf5.
database:       AnnBuilder, SAGElyzer, Rdbi and RdbiPgSQL.
analyses:       packages Biobase, ctc, daMA, edd, factDesign,
                genefilter, geneplotter, globaltest, gpls, limma,
                RMAGEML, multtest, pamr, wvalue, ROC, siggenes and
splicegear.
annotation:     packages annotate, AnnBuilder, humanLLMappings
                KEGG, GO, SNPtools, makecdfenv and ontoTools.
proteomics:     packages gpls, PROcess and apComplex.
arrayCGH:       packages aCGH, DNAcopy, repeated, and rmutil.
all:            All of the Bio


Here's my version info:
> version
         _              
platform i386-pc-mingw32
arch     i386           
os       mingw32        
system   i386, mingw32  
status                  
major    2              
minor    0.0            
year     2004           
month    10             
day      04             
language R 

What's wrong?

Kind regards,

Jelle Goeman

http://www.math.leidenuniv.nl/~jgoeman