[BioC] install Rgraphviz and graphviz MAC OSX 10.3.5

Ingmar Visser i.visser at uva.nl
Tue Oct 12 16:50:53 CEST 2004


Hi All,
I'm trying to install Rgraphviz and graphviz on my MAC  with OSX 10.3.5
but I'm failing miserably so far:

This is the error I get when installing graphviz (using ./configure and make
from the terminal):


 gcc -DHAVE_CONFIG_H -I. -I. -I../../.. -I../../../lefty
-I/usr/local/include -I/usr/X11R6/include -g -O2 -fno-common -Wall -DNDEBUG
-MT garray.lo -MD -MP -MF .deps/garray.Tpo -c garray.c  -fno-common -DPIC -o
.libs/garray.o
In file included from /usr/include/sys/select.h:71,
                 from ../../../lefty/common.h:66,
                 from garray.c:3:
/usr/include/sys/event.h:68: error: parse error before "u_short"
/usr/include/sys/event.h:72: error: parse error before '}' token
In file included from ../../../lefty/common.h:66,
                 from garray.c:3:
/usr/include/sys/select.h:88: error: parse error before "u_int"
In file included from garray.c:3:
../../../lefty/common.h:132: error: conflicting types for `panic'
/usr/include/mach/mach.h:79: error: previous declaration of `panic'
make[5]: *** [garray.lo] Error 1
make[4]: *** [all-recursive] Error 1
make[3]: *** [all-recursive] Error 1
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2

Any tips or hints are welcome.

This is graphviz version 1.16, the latest version AFAIK.

thanks in advance, ingmar



More information about the Bioconductor mailing list