[BioC] question about read.marrayRaw
Ren Na
na at uthscsa.edu
Fri Oct 1 23:46:03 CEST 2004
I try to create a marrayRaw object. The problem I am having is that only
the first line of my every .spot file has been read by the function
read.marrayRaw. The following is what I did,
xpd.layout <- read.marrayLayout(fname="Mouse24052004.txt", ngr=8, ngc=4,
nsr=23, nsc=23, skip=0, ctl.col=6)
xpd.samples<- read.marrayInfo("sample.txt")
xpd.gnames<-read.marrayInfo("Mouse24052004.txt", info.id=6, labels=10,
skip=0)
targets <- readTargets("Targets.txt")
fnames<-targets$FileName
xpd.raw<-read.marrayRaw(fnames, name.Gf="Gmedian", name.Gb="morphG",
name.Rf="Rmedian", name.Rb="morphR", layout=xpd.layout,
gnames=xpd.gnames, targets=xpd.samples)
> xpd.raw
An object of class "marrayRaw"
@maRf
./1391.spot ./1392.spot ./1348.spot ./1349.spot ./1373.spot ./1374.spot
[1,] 621 217 639 539 329 290
./1393.spot ./1394.spot ./1358.spot ./1359.spot ./1371.spot ./1372.spot
[1,] 1704 198 606 563 562 1052
./1387.spot ./1388.spot ./1397.spot ./1398.spot ./1399.spot ./1390.spot
[1,] 817 101 297 433 1926 650
@maGf
./1391.spot ./1392.spot ./1348.spot ./1349.spot ./1373.spot ./1374.spot
[1,] 380 657 555 554 638 346
./1393.spot ./1394.spot ./1358.spot ./1359.spot ./1371.spot ./1372.spot
[1,] 3267 349 503 635 844 1596
./1387.spot ./1388.spot ./1397.spot ./1398.spot ./1399.spot ./1390.spot
[1,] 1078 90 334 549 2118 1093
@maRb
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I couldn't figure out what I did wrong. Thanks for any help.
Ren
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