[BioC] Bug in summary.TestResults (limma)

[Marcus Davy]

Hi,
the row names in summary.Testresults currently refers to the object "results" which doesn't necessarily exist.

The offending line of code is:

tab <- array(0, c(3, ncol(object)), dimnames = list(c("-1", "0", "1"), colnames(results)))

which should be 

tab <- array(0, c(3, ncol(object)), dimnames = list(c("-1", "0", "1"), colnames(object)))


e.g. 
 foo <- classifyTestsF(fit, p.value=0.001)
summary(foo)
foo <- classifyTestsF(fit, p.value=0.001)
> summary(foo)
Error in colnames(results) : Object "results" not found


marcus


> packageDescription("limma", field="Version")
[1] "1.8.9"
> version
         _                
platform i686-pc-linux-gnu
arch     i686             
os       linux-gnu        
system   i686, linux-gnu  
status                    
major    2                
minor    0.0              
year     2004             
month    10               
day      04               
language R                
> 




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