[BioC] question

[Robert Gentleman]

On Fri, Nov 19, 2004 at 01:54:12PM -0500, Sokol Haxhinasto wrote:
> Hi
> I have a question. i have a mac and using osX
> I installed the R and then requested getbioc(), and a large list is 
> being generated, howver, there are lots of red-error marks throught 
> the process.  here is an example

  You should have a look at the R OS X FAQ, to use getBioC, you will
  need to install most of the developer tools. What you need and how
  it should be installed is described in some detail there. 

  Your other option is to install OS X binaries - but right now they
  are not part of the automatic download.

   Robert


> 
> /Library/Frameworks/R.framework/Resources/bin/SHLIB: line 1: make: 
> command not found
> ERROR: compilation failed for package 'affy'
> 
> or
> 
> Warning message:
> 
> Undefined slot classes in definition of "widgetView": winid(class 
> "tkwin") in: .completeClassSlots(ClassDef, where)
> 
> should i ignore them or do you have any suggestion what to do.
> oh, i have a mac  just in case it is mac-specific
> thanks
> 
> 
> -- 
> Sokol Haxhinasto Ph.D.
> Massachusetts Institute of Technology
> 77 Massachusetts Avenue
> Center for Cancer Research
> E17-121
> Cambridge, MA 02139-4307
> sokolh at mit.edu
> 617-324-8700 or 617-258-8308
> 
> Sokol Haxhinasto
> Benoist-Mathis Lab
> Immunology and Immunogenetics Department
> Joslin Diabetes Center
> One Joslin Place, Rm. 495
> Boston, MA  02215
> 
> phone: (617) 713-3416
> fax:   (617) 264-2744
> e-mail: Sokol.Haxhinasto at joslin.harvard.edu
> 	[[alternative HTML version deleted]]
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor

-- 
As of Nov. 22 - new contact details
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| Robert Gentleman                         phone: (206) 667-7700            |
| Head, Program in Computational Biology   fax:                             |
| Division of Public Health Sciences       office: M2-B865                  |
| Fred Hutchinson Cancer Research Center   email: rgentlem at fhcrc.org        |
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