[BioC] Problems with aCGH library

[James W. MacDonald]

James W. MacDonald wrote:
> Christopher, Neil (NIH/NCI) wrote:
> 
>> Whenever I try to load the aCGH library I get an error:
>>
>>  
>>
>> Error in library(pkg, character.only = TRUE, logical = TRUE, lib.loc =
>> lib.loc) :
>>         'repeated' is not a valid package -- installed < 2.0.0?
>>
>>  
>>
>> I have installed the "arrayCGH" library using getBioC successfully.  I
>> cannot find any information on this 'repeated' package.  Is there 
>> anywhere I
>> can download it?
> 
> 
> Yes.
> 
> library(reposTools)
> install.packages2("repeated")
> 
> Should get you where you want to go.
> 
> Jim

Actually, I should stand corrected if you are on e.g., win32. The 
current pre-built version of repeated was built under R < 2.0.0, so 
re-installing won't work. If you are laboring on a Windows box, you will 
either need to get set up to build packages (not completely trivial, but 
not rocket science either; see the R-FAQ for windows under 'installing 
packages'), or you will need to get someone (Jim Lindsey is the 
maintainer of repeated, so I would assume starting there is the logical 
thing to do) to build a new win32 package for you.

Best,

Jim


> 
> 
>>
>>  
>>
>> Neil
>>
>>
>>     [[alternative HTML version deleted]]
>>
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> 
> 
> 


-- 
James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109