[BioC] GOLL2GO
John Zhang
jzhang at jimmy.harvard.edu
Wed Nov 10 18:51:56 CET 2004
It is now GOLOCUSID2GO to make the naming the consistant throughout packages. We
will update the information on the web. Thanks.
>I am wondering if GOLL2GO is not available anymore in the GO package.
>
>I just downloaded R 2.0.0 and installed Bioconductor.
>
>Although in the online description of GO the environment GOLL2GO is listed, I
can not find it in my installed version.
>
>The output of GO() is
>Quality control information for GO
>Date built: Tue Sep 28 14:59:13 2004
>Mappings found for non-probe based rda files:
> GOALLLOCUSID found 7514
> GOBPANCESTOR found 8808
> GOBPCHILDREN found 4244
> GOBPOFFSPRING found 4244
> GOBPPARENTS found 8808
> GOCCANCESTOR found 1420
> GOCCCHILDREN found 470
> GOCCOFFSPRING found 470
> GOCCPARENTS found 1420
> GOLOCUSID2ALLGO found 37866
> GOLOCUSID2GO found 37866
> GOLOCUSID found 6246
> GOMFANCESTOR found 7370
> GOMFCHILDREN found 1337
> GOMFOFFSPRING found 1337
> GOMFPARENTS found 7370
> GOTERM found 17601
>
>I have several scripts that depend on GO and I wonder if I will have to rewrite
them.
>Is LOCUSID same as LL (locus link) and why the change?
>
>Thanks,
>
>Ricardo.
>
>~~~~~~~~~~~~~~~~~~~~~~
> Ricardo A. Verdugo S., M.V.
> Juan Medrano Laboratory
> Animal Science Dept.
> UC Davis, CA 95616
>~~~~~~~~~~~~~~~~~~~~~~
> [[alternative HTML version deleted]]
>
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Jianhua Zhang
Department of Biostatistics
Dana-Farber Cancer Institute
44 Binney Street
Boston, MA 02115-6084
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