[BioC] gregmisc package-problems with BioC latest release?
Fátima Núñez Mangado
fnunez at usal.es
Tue Nov 2 17:49:22 CET 2004
Hello all,
I am not sure whether this is a question that should be addressed to the R
list or the Bioconductor one. If you feel that this is not a Bioconductor
issue, I apologize in advance.
I have just installed the latest R version form CRAN:
> version
_
platform i386-pc-mingw32
arch i386
os mingw32
system i386, mingw32
status
major 2
minor 0.0
year 2004
month 10
day 04
language R
And also the latest Bioconductor release with no problems whatsoever:
> source("http://www.bioconductor.org/getBioC.R")
> getBioC()
Running getBioC version 1.2.67....
If you encounter problems, first make sure that
you are running the latest version of getBioC()
which can be found at: www.bioconductor.org/getBioC.R
Please direct any concerns or questions to bioconductor at stat.math.ethz.ch.
.
.
.
>From URL: http://www.bioconductor.org/repository/release1.5/package/Win32
affyPLM version 1.2.5
Biobase version 1.5.0
annotate version 1.5.1
genefilter version 1.5.0
geneplotter version 1.5.0
ROC version 1.0.13
siggenes version 1.2.11
marray version 1.5.25
edd version 1.5.0
>From URL: http://www.bioconductor.org//CRANrepository
limma version 1.8.6
You have downloaded a default set of packages.
However, when I install the package "gregmisc" from CRAN and I try to access
it I get the following:
> local({a <- CRAN.packages()
+ install.packages(select.list(a[,1],,TRUE), .libPaths()[1], available=a,
dependencies=TRUE)})
trying URL `http://cran.r-project.org/bin/windows/contrib/2.0/PACKAGES'
Content type `text/plain; charset=iso-8859-1' length 22200 bytes
opened URL
downloaded 21Kb
trying URL
`http://cran.r-project.org/bin/windows/contrib/2.0/gregmisc_2.0.0.zip'
Content type `application/zip' length 687958 bytes
opened URL
downloaded 671Kb
bundle 'gregmisc' successfully unpacked and MD5 sums checked
Delete downloaded files (y/N)? y
updating HTML package descriptions
> library(gregmisc)
Error in library(gregmisc) : There is no package called 'gregmisc'
Am I missing something? Am I doing anything wrong? Any help would be greatly
appreciated.
Thanks everyone in advance and have a good day.
Fátima
---
Fátima Núñez
Centro de Investigación del Cáncer, CIC
Universidad de Salamanca-CSIC
Campus Unamuno
37007 Salamanca
Phone: + 34 923 294802
Fax: + 34 923 294795
E-mail: fnunez at usal.es
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