[BioC] Error in parse() loading affylmGUI

[Paul Boutros]

Thanks James, reinstalling fixed it.  It's curious, though,
because I had the problem both on my initial install and
after I upgraded to the newest version at WEHI.

Paul

> -----Original Message-----
> From: James Wettenhall [mailto:wettenhall at wehi.edu.au]
> Sent: Monday, June 21, 2004 10:29 PM
> To: paul.boutros at utoronto.ca
> Cc: BioConductor Mailing List
> Subject: Re: [BioC] Error in parse() loading affylmGUI
> 
> 
> Hi Paul,
> 
> I'm running R 1.9.0, limma 1.6.14 and affylmGUI 1.1.0 without 
> problems on Windows 2000/NT.  Can I suggest reinstalling limma 
> and affylmGUI with:
> install.packages("limma",contriburl="http://bioinf.wehi.edu.au/limma")
> install.packages("affylmGUI",contriburl="http://bioinf.wehi.edu.au
> /affylmGUI")
> 
> after checking that .libPaths() is set appropriately.
>  
> Maybe you got a corrupt download last time.
> 
> > When I load the library and start the interface I get an 
> error-box popping up 
> > saying:
> > Error in parse(file,n,text,prompt): parse error
> 
> Do you have any files in the etc/ subdirectory of affylmGUI with 
> extension .R ?  affylmGUI sources these .R files automatcially 
> when it starts so that they can be used as custom menu items.
> 
> Please use the correct capitalization:
> library(affylmGUI)
> 
> instead of library(affylmgui)
> 
> Hope this helps,
> James
> 
> 
> > 
> > And nothing suspicous appears in the console:
> > > library(affylmgui);
> > Loading required package: limma 
> > Loading required package: affy 
> > Welcome to Bioconductor 
> >          Vignettes contain introductory material.  To view, 
> >          simply type: openVignette() 
> >          For details on reading vignettes, see
> >          the openVignette help page.
> > Loading required package: tcltk 
> > Warning message: 
> > Package 'affylmgui' not found.
> >  Using case-insensitive match 'affylmGUI' .
> >  Future versions of R will require exact matches. 
> > 
> > ActiveTcl was found in the Windows Registry (for 
> LOCAL_MACHINE), installed in
> > E:\tcl
> > This directory will be added to the Tcl search path to enable affylmGUI
> > to find the Tktable and BWidget extensions.
> > 
> > To begin, type affylmGUI() or use the pull-down menu.
> > 
> > Searching for user-defined affylmGUI commands in 
> > C:/PROGRA~1/R/rw1090/library/affylmGUI/etc ...
> > 
> > Any suggestions?
> > Paul
> > 
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> > 
> 
>