[BioC] L-BFGS-B needs finite values of fn error in vsn package
Isaac Neuhaus
isaac.neuhaus at bms.com
Thu Jun 17 22:47:55 CEST 2004
I have installed R version 1.9 (64 bit compiled) and the Biocunductor
packages release 1.4 which include the vsn package 1.4.13 and I am
getting the following error:
data <- ReadAffy(filenames=cels, sampleNames=names, verbose=F)
> vsn.data <- expresso(data, normalize.method="vsn", bg.correct=F,
pmcorrect.method="pmonly", summary.method="medianpolish")
normalization: vsn
PM/MM correction : pmonly
expression values: medianpolish
normalizing...vsn: 20000 x 24 matrix (1 stratum). Please wait for 4
dots: Error: L-BFGS-B needs finite values of fn
Execution halted
Isaac
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