[BioC] Anopheles/malaria Affy chips

[Jason Skelton]

Hello everybody,

I would like to know if anyone used the Anopheles/malaria Affymetrix 
chips in bioconductor or any other 2-genome-chip but hybridising with 
one genome only? I do, and hybridise with 1 species only, resulting in a 
problematic normalisation procedure.
I tried Affy, simpleaffy and affylmGUI, and can't manage to have good 
statistics while I have no problem at all using a 1 species chip. Any 
suggestion would be largely appreciated.
Thanks a lot

Celine