[BioC] Problems using GO 1.6.0 in Windows

[Oosting, J. (PATH)]

I first encountered the problem in R 1.9 beta, and now installed the final
1.9.0 and a fresh install of all of Bioconductor with develOK=TRUE (to
install the 1.6.0 metadata packages)
No errors occured during the installation

The function GO() does return the info on the datafiles, but 

ls(env= GOCCPARENTS)
gives an error

after loading the environment manually with
load(file.path(.path.package("GO"), "data", "GOCCPARENTS.rda"))
the ls command works OK.

Jan

-----Original Message-----
From: James MacDonald
To: Oosting, J. (PATH); bioconductor at stat.math.ethz.ch
Sent: 6/5/2004 2:10 PM
Subject: Re: [BioC] Problems using GO 1.6.0 in Windows

I just installed GO 1.6.0 on R-1.9.0 and I don't have the problems you
indicate. Perhaps something got corrupted on your end? You might try
re-installing GO and see if it helps.

Best,

Jim



James W. MacDonald
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623
>>> "Oosting, J. (PATH)" <J.Oosting at lumc.nl> 06/05/04 7:24 AM >>>
I'm trying to use the new GO package in the windows version of R 1.9.0,
but
have problems using any of the environments

All environments show a similar error msg
> ls(env= GOMFPARENTS)
Error in ls(env = GOMFPARENTS) : Object "GOMFPARENTS" not found

I've also tried KEGG, hgu133a and hgu95av2 packages. KEGG works ok, but
the
other 2 metadata packages also give a similar error when trying to
access
the data

Jan Oosting

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