[BioC] Mapping 10k chip
Glenn Stone
Glenn.Stone at csiro.au
Thu Jun 3 03:38:54 CEST 2004
Hello all,
I've managed to build a cdf env so that I can read the CEL files for the
mapping 10k chip. Using bioconductor 1.4 in R 1.9.0 the pm and mm
functions no longer return the probe ids as names. I can get the probe
names using probeNames and the pm and mm allows me to get the
match/mismatch data.
Does anyone know how I can get the sense/antisense and the offset
information for each probe? Ive looked in the CDF file and I can't
decipher most of it.
--
Glenn Stone
Leader, Bioinformatics for Human Health
http://www.bioinformatics.csiro.au
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