[BioC] pearson correlation.

[Heidi Dvinge]

Hi Rick

Have you tried looking at cor() with method="pearson"? I guess that should
do the trick. Just type ? cor for more info. It's from the basic 'stats'
package. If you don't have too  many genes, you can also plot the
correlations using for example plot.cor() from the 'sma' package.

HTH
\Heidi

On Mon, 26 Jul 2004, Dixon, Dr R. wrote:

> Hi Bioconductor,
>
> i am new to the Bioconductor world and have a question i hope you can help me with.
> I wish to compute the pearson correlation of the expression values between a gene of interest and a number of other genes in a number of experiments.
>
> Can someone direct me to the relevant Bioconductor package ?
>
> Thankyou
> Rick
> ____________________________________
>
> Dr. Richard Dixon
>
> Dept. of Cardiovascular Sciences,
> University of Leicester,
> Clinical Sciences Wing,
> Glenfield Hospital,
> Leicester, LE3 9QP
> UK
>
> Tel: (0116) 250 2541
> Fax: (0116) 287 5792
> e-mail: rd67 at le.ac.uk
>
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