[BioC] Top 50 Candidate genes: "wrong" pValues and B results!

Adrian Peres adrian.peres at cropdesign.com
Mon Jul 26 09:47:30 CEST 2004


Hi all
I am using Limma GUI to analyze Agilent data and I have some troubles.
Hereafter I placed a sample of the statistic analysis  that looks very 
strange to me!
The pValues are all "1" and I don't understand why? B data are not 
better neither...
Can my data be so bad?
Greetings,
Adrian
M 	A 	t 	Pvalue 	B
2.099 	9.493 	27.16 	1 	-3.417
-1.389 	11.37 	-15.45 	1 	-3.437
-1.079 	8.683 	-15.28 	1 	-3.438
-1.073 	8.952 	-14.28 	1 	-3.442
0.944 	6.831 	12.66 	1 	-3.451
-0.8108 	8.475 	-11.51 	1 	-3.46
-0.7985 	8.784 	-11.39 	1 	-3.461
-0.803 	12.67 	-11.38 	1 	-3.461
-0.9375 	12.22 	-11.13 	1 	-3.463
-0.8701 	10.24 	-10.84 	1 	-3.466
-1.383 	12.55 	-10.63 	1 	-3.468
-0.846 	9.56 	-10.22 	1 	-3.473
-0.7271 	11.98 	-10.1 	1 	-3.474
0.977 	8.603 	9.975 	1 	-3.476
-0.7734 	9.416 	-9.716 	1 	-3.48
-0.975 	9.89 	-9.52 	1 	-3.482
-0.6683 	7.127 	-9.514 	1 	-3.482
-0.8116 	6.528 	-9.493 	1 	-3.483
-0.673 	8.966 	-9.434 	1 	-3.484
-0.8475 	11.26 	-9.125 	1 	-3.489
-0.8426 	10.43 	-9.038 	1 	-3.49
-0.7633 	8.999 	-8.977 	1 	-3.491
-0.8202 	10.14 	-8.804 	1 	-3.494
-0.6119 	9.076 	-8.671 	1 	-3.497
-0.7045 	9.458 	-8.611 	1 	-3.498
-0.761 	10.07 	-8.468 	1 	-3.501
-0.9212 	10.8 	-8.437 	1 	-3.502
-1.003 	8.465 	-8.392 	1 	-3.502


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