[BioC] Error: read.affybatch
S Peri
biocperi at yahoo.com
Thu Jul 1 05:38:30 CEST 2004
Hello group,
I am trying to read my cel files using read.affybatch
method.
I stored all my cel files, probe information file and
experiment file in one directory.
I used the following commands:
>fls = list.files()
>ab = read.affybatch(filenames=fls)
Error in initialize(value, ...) : Is
breastCancerData_2.txt really a CEL file? tried
reading as text, gzipped text and binary
In addition: Warning message:
Incompatible phenoData object. Created a new one.
in: read.affybatch(filenames = fls)
I am getting the above error. What could be
happening.
I am trying to analyze Mike West and Nievens Breast
cancer affy data (Duke University).
Could any one please help me what is wrong here and
also how does a phenoData file look like. What is
phenoData.
Please help.
thank you
SP
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