[BioC] XML installation

[A.J. Rossini]

You need to install the GNOME XML libraries or a similar library (I
thought expat might work, but maybe not).

best,
-tony


"Roger Vallejo" <rvallejo at psu.edu> writes:

> I am trying to install the XML and AnnBuilder packages in a SUN SOLARIS.
> I have problems installing the XML. I got these error messages (please
> see below). 
>
> I can guess that the problem is due to this:
>
>  
>
> checking for xml-config... no
>
> checking for xml2-config... no
>
> Cannot find xml2-config
>
>  
>
> I would appreciate any hint on how to fix this problem. Thanks a lot. 
>
> Roger
>
>  
>
> ############################################# 
>
>> options(CRAN = "http://cran.r-project.org/")
>
>> install.packages("XML", "~/r181/library") 
>
> trying URL `http://cran.r-project.org//src/contrib/PACKAGES'
>
> Content type `text/plain; charset=iso-8859-1' length 156484 bytes
>
> opened URL
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> ..
>
> downloaded 152Kb
>
>  
>
> trying URL `http://cran.r-project.org//src/contrib/XML_0.95-6.tar.gz'
>
> Content type `application/x-tar' length 551360 bytes
>
> opened URL
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... .......... ..........
>
> .......... .......... .......... ........
>
> downloaded 538Kb
>
>  
>
> * Installing *source* package 'XML' ...
>
> checking for gcc... gcc
>
> checking for C compiler default output... a.out
>
> checking whether the C compiler works... yes
>
> checking whether we are cross compiling... no
>
> checking for suffix of executables... 
>
> checking for suffix of object files... o
>
> checking whether we are using the GNU C compiler... yes
>
> checking whether gcc accepts -g... yes
>
> checking for gcc option to accept ANSI C... none needed
>
> checking how to run the C preprocessor... gcc -E
>
> checking for xml-config... no
>
> checking for xml2-config... no
>
> Cannot find xml2-config
>
> ERROR: configuration failed for package 'XML'
>
> ** Removing
> '/.../dce.psu.edu/fs/users/r/l/rlv10/r181/~/r181/library/XML'
>
> ################################3
>
>  
>
> Roger L. Vallejo, Ph.D.
>
> Assist. Professor of Genomics & Bioinformatics
>
> The Pennsylvania State University
>
> Department of Dairy & Animal Science
>
> 305 Henning Building
>
> University Park, PA 16802
>
> Phone:  (814) 865-1846 
>
> Fax: (814) 863-6042
>
> Email:   rvallejo at psu.edu <mailto:rvallejo at psu.edu> 
>
>  
>
>
> 	[[alternative HTML version deleted]]
>
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-- 
rossini at u.washington.edu            http://www.analytics.washington.edu/ 
Biomedical and Health Informatics   University of Washington
Biostatistics, SCHARP/HVTN          Fred Hutchinson Cancer Research Center
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