[BioC] Sequence data and filtering

[Justin Borevitz]

Hi Hrishi, load the probe package for your array type, which contains the
sequence of the 25mers.
http://www.bioconductor.org/data/probes/Packages/hgu95av2probe_1.0.zip
or 
http://www.bioconductor.org/data/probes/Packages/hgu95av2probe_1.0.tar.gz

library(hgu95av2probe)
data(hgu95av2probe)
summary(hgu95av2probe)

my.out.seq <- hgu95av2probe$sequence[out.of.bounds]
my.in.seq <- hgu95av2probe$sequence[in.bounds]

Justin
-----
Justin Borevitz
Ecology and Evolution (CLSC 915E)
University of Chicago
1101 E. 57th St.
Chicago, IL 60637 USA
http://natural-systems.org 

___________________________________
Message: 15
Date: Tue, 28 Dec 2004 12:41:22 -0800 (PST)
From: hrishikesh deshmukh <d_hrishikesh at yahoo.com>
Subject: [BioC] Sequence data and filtering
To: bioconductor at stat.math.ethz.ch
Message-ID: <20041228204122.92550.qmail at web50301.mail.yahoo.com>
Content-Type: text/plain; charset=us-ascii

Dear Bioconductorians,

My sincere apologies if this email is duplicated.I
have searched the mailing list and could not find a
way to solve my problem: Find out the probe intensity
(PM adn MM) for HG_U95Av2 which fall in (200 to 20000
units) range and extract their respective PM
sequences. I have been able to filter the probes but
how do i extract the sequence data?! I am including
the small script which i have written for filtering,
now how do i extract sequence information.

Thanks in advance.

Hrishi