[BioC] pathway analysis package

[Sean Davis]

It is a metadata package.

http://www.bioconductor.org/data/metaData.html

Sean

On Dec 17, 2004, at 11:34 AM, Josephine Liang wrote:

> Hi, Robert and Saurin;
>
> In the release 1.5, I find the KEGGSOAP, RBGL and Rgraphiviz packages, 
> but not KEGG?  Any pointers
>
>
> Thanks
> Josephine
>
> Saurin D. Jani wrote:
>
>> Hi,
>>
>> Regarding Pathway analysis:
>> In bioconductor when I load: library(KEGG)
>>
>> I can do this:
>> kegg <- as.list(rae230aPATH2PROBE);
>>
>> and I can generate heatmap of pathway probes which are involved in my 
>> DEgenes
>> so, I can see which genes are up and down in perticular pathway.
>>
>> how can I use interaction data extracted from human BioCarta pathways 
>> for my
>> differentially expressed genes?
>>
>> if anyone has done please let me know...
>>
>>
>> Thank you,
>> Saurin
>>
>>
>>
>
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