[BioC] Annotation of Affymetrix hgu133plus2 chip

[Sean Davis]

This implies that one needs to use development versions of annotate, 
GO, etc. to be "compatible"?  Just for clarification....

On Aug 31, 2004, at 8:17 AM, John Zhang wrote:

>
>> Jianhua can correct me, but I think they are updated quarterly, so 
>> some
>> of the annotation is likely to have changed.
>
> Now we have both the release and developmental tracks that work with 
> the release
> and developmental BioC packages, respectively. Only the developmental 
> track gets
> updated quartely. To get the devel verion you do:
>
>> library(reposTools)
>> install.packages2(PkgName, develOK = TRUE)
>
>
>>
>> Sean
>>
>> On Aug 31, 2004, at 6:21 AM, Dipl.-Ing. Johannes Rainer wrote:
>>
>>> hi,
>>> does somebody know if the annotation packages for the Affymetrix 
>>> chips
>>> will be
>>> updated sometimes?
>>> i am using the annotation package hgu133plus2 which was created in
>>> march and i
>>> wonder if there may be some changes, for example retired UniGene IDs 
>>> or
>>> something like that. I found already a probe set that is annotated to
>>> GenBank,
>>> but not on UniGene, although there exists a UniGene cluster with this
>>> GenBank
>>> ID.
>>> thanks to all
>>>
>>> _______________________________________________
>>> Bioconductor mailing list
>>> Bioconductor at stat.math.ethz.ch
>>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>
> Jianhua Zhang
> Department of Biostatistics
> Dana-Farber Cancer Institute
> 44 Binney Street
> Boston, MA 02115-6084