[BioC] Nimblegen chip data analysis

[Sean Davis]

Andrew,

Nimblegen is just two-color data, but on a grand scale.  I would look at
limma or marray packages, but if you have a custom array for a specialized
purpose, other packages may be more appropriate.  You will have to read the
data yourself, so you will probably have to learn to use read.table (see
'Introduction to R manual' and 'R data import/export', both on the CRAN
site).  (There is not a package for reading Nimblegen data.)

Sean

----- Original Message -----
From: "Andrew Kern" <adkern at ucdavis.edu>
To: <bioconductor at stat.math.ethz.ch>
Sent: Friday, August 27, 2004 5:51 PM
Subject: [BioC] Nimblegen chip data analysis


> has anyone out there used bioconductor to analyze nimblegen
> oligonucleotide chip data? if so could you point me in the right
> direction to get me started? i've never before analyzed microarray data
> and i'm hoping to use bioconductor for this project.
> cheers,
> andrew kern
>
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